PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.06G085000.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family C2H2
Protein Properties Length: 606aa    MW: 69442.4 Da    PI: 4.9818
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.06G085000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.30.0011302322222
                          EETTTTEEESSHHHHHHHHHH CS
              zf-C2H2   2 kCpdCgksFsrksnLkrHirt 22 
                           C  Cgk F++  + k+H ++
  Manes.06G085000.1.p 302 YCVVCGKKFKSEKQWKNHEQS 322
                          5*****************876 PP
2zf-C2H212.90.00033576595221
                          EETTTTEEESSHHHHHHHHH CS
              zf-C2H2   2 kCpdCgksFsrksnLkrHir 21 
                          +C++Cg+ F ++  L++H++
  Manes.06G085000.1.p 576 VCEKCGEEFESRNKLHKHLS 595
                          6*****************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF465653.53E-25379IPR001623DnaJ domain
Gene3DG3DSA:1.10.287.1101.0E-25475IPR001623DnaJ domain
SMARTSM002712.3E-26668IPR001623DnaJ domain
CDDcd062576.21E-21765IPR001623DnaJ domain
PROSITE profilePS5007619.916776IPR001623DnaJ domain
PfamPF002262.4E-23873IPR001623DnaJ domain
PRINTSPR006253.5E-16927IPR001623DnaJ domain
PRINTSPR006253.5E-162742IPR001623DnaJ domain
PRINTSPR006253.5E-164868IPR001623DnaJ domain
PROSITE patternPS0063605372IPR018253DnaJ domain, conserved site
SuperFamilySSF576671.72E-13295342No hitNo description
SMARTSM004515.0E-6298332IPR003604Zinc finger, U1-type
PfamPF121713.1E-10301326IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.43301325IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280303325IPR007087Zinc finger, C2H2
PROSITE profilePS501579.577575604IPR007087Zinc finger, C2H2
SMARTSM003551.8575599IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280577599IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 606 aa     Download sequence    Send to blast
MASEKRCHYE VLGLSRDCTA EEIRSAYRKL ALQCHPDKLI QSGLSQAEAT AKFQELAQAY  60
EVLSDPKERA WYDSHRSQIL FSDPNSANSV PGSVIPNLFS FFSNTVYSGY TDTGKGFYKV  120
YSDVFNKIYA NEISFCKKLG LRLDSLREAP VMGNLASPYG QVTAFYNYWL GFCTVMDFCW  180
VDQYDVMAGP NRKSRRVMEE ENKKLRKKAR REYNETVRGL AEFVKKRDKR VIDMMVKKNA  240
ELEKKKEEDR ERKKKLEREK MERARAYEEP EWAKIDEEDV EEVEGFEDEG KSKKGNEGKE  300
LYCVVCGKKF KSEKQWKNHE QSKKHKEKVA EFRESFGDEE EETVEDFEED EQENNGEILN  360
NVDAVDERFR EGFKIREEEN GVENPELSDE EDGFFDVEDG DEVEGFDVAD GNLDDDEADD  420
GDGEMSVLEA MVTGHKSRKS RGSRHVNENS PVEVRVEDVN EELEVMEYNN RKSRRRRGKK  480
ETGKNYEGLS EKGDFVERSP DGENNGDDAR PTEESPSHSF GEDDAGNDNN NVRKNHKNSY  540
HPVNNKGPAK KESNNKTKSL SKGKKGKAAA NNSGNVCEKC GEEFESRNKL HKHLSDTGHA  600
SLKFR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1202210KKLRKKARR
2473480RRRRGKKE
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.06G085000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021615657.10.0DNAJ protein JJJ1 homolog
SwissprotQ9C9111e-180JJJ1_ARATH; DNAJ protein JJJ1 homolog
TrEMBLA0A2C9VP090.0A0A2C9VP09_MANES; Uncharacterized protein
STRINGcassava4.1_003940m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65511922
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74250.11e-153DNAJ heat shock N-terminal domain-containing protein