PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.06G066600.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family MYB
Protein Properties Length: 316aa    MW: 36036.2 Da    PI: 5.9118
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.06G066600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.41.4e-172572148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         rg+WT eEd ll ++++++G g+W+  a++ g++Rt+k+c++rw++yl
  Manes.06G066600.1.p 25 RGPWTLEEDTLLTHYIARHGEGRWNMLASYAGLKRTGKSCRLRWLNYL 72
                         89********************************************97 PP
2Myb_DNA-binding52.51.1e-1678121146
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          rg+ T++E++l+++++ ++G++ W++Ia++++ gRt++++k++w++
  Manes.06G066600.1.p  78 RGNLTPQEQLLILELHSKWGNR-WSKIAQHLP-GRTDNEIKNYWRT 121
                          7999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.5452072IPR017930Myb domain
SuperFamilySSF466898.99E-3123119IPR009057Homeodomain-like
SMARTSM007176.6E-152474IPR001005SANT/Myb domain
PfamPF002496.8E-162572IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.7E-232679IPR009057Homeodomain-like
CDDcd001672.16E-112772No hitNo description
PROSITE patternPS0017504049IPR001345Phosphoglycerate/bisphosphoglycerate mutase, active site
PROSITE profilePS5129425.93273127IPR017930Myb domain
SMARTSM007172.0E-1577125IPR001005SANT/Myb domain
PfamPF002491.1E-1578121IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-2380126IPR009057Homeodomain-like
CDDcd001677.91E-1282121No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0003677Molecular FunctionDNA binding
GO:0003824Molecular Functioncatalytic activity
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MRSMRAPSVA NRMCNSREDE SELRRGPWTL EEDTLLTHYI ARHGEGRWNM LASYAGLKRT  60
GKSCRLRWLN YLKPDIKRGN LTPQEQLLIL ELHSKWGNRW SKIAQHLPGR TDNEIKNYWR  120
TRVQRQARQL NIESNSKSFL DAVRCFWMPR LLQKVEQNCY SSPSSTLDSQ THAIASASSS  180
NFEQVANSFS SETFPPQPKL TQYSNPASEH SCSVTSSSVL STDFIPISHQ TEILENPASS  240
CPPLLDSTVY NNLLLSDIYY VENSGYGMDA FNPASMPEFD TFGDSTSECN MADGNWVFDD  300
YMADPLWNMN DMWQV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-25221274108B-MYB
1gv2_A2e-25221271105MYB PROTO-ONCOGENE PROTEIN
1h8a_C2e-252212724128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor of phosphate (Pi) starvation-induced genes. Regulates negatively Pi starvation responses via the repression of gibberellic acid (GA) biosynthesis and signaling. Modulates root architecture, phosphatase activity, and Pi uptake and accumulation. {ECO:0000269|PubMed:19529828}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.06G066600.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by salicylic acid (PubMed:16463103). Induced reversibly in response to phosphate (Pi) deficiency but repressed in the presence of Pi, specifically in the leaves. Availability of Pi increases with decreased levels (PubMed:19529828). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:19529828}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021617027.10.0transcription factor MYB62-like
SwissprotQ9C9G75e-92MYB62_ARATH; Transcription factor MYB62
TrEMBLA0A2C9VNF90.0A0A2C9VNF9_MANES; Uncharacterized protein
STRINGcassava4.1_012290m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16393494
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68320.12e-93myb domain protein 62
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]