PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.06G051300.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family WRKY
Protein Properties Length: 462aa    MW: 50044.8 Da    PI: 4.7637
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.06G051300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.77.6e-31230288259
                          --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                          +D ++WrKYGqK++kgs++pr+YYrC+s+ gC+++k+vers++dp++++itY++eHnh+
  Manes.06G051300.1.p 230 SDLWAWRKYGQKPIKGSPYPRGYYRCSSSkGCSARKQVERSRTDPNMLVITYTSEHNHP 288
                          699************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081133.109224290IPR003657WRKY domain
Gene3DG3DSA:2.20.25.805.5E-31224290IPR003657WRKY domain
SuperFamilySSF1182902.88E-26227290IPR003657WRKY domain
SMARTSM007741.4E-37229289IPR003657WRKY domain
PfamPF031069.9E-26231288IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 462 aa     Download sequence    Send to blast
MDNYQGDLTD IVRGSAGALG QSDISPVSNW EFPSDPLSLS SSSSAMEDNR DNVFGDPFVN  60
MRDPLLYELN VAAGSGYFSS SNSTDHMLST SLEDISNDFS GANTSNILAH KVFEEEMDKN  120
PCNIFSRIQI SQNNPTKLPA SPCDSPVVAS ASASASSSSP RGFKASMVSI DMINTNISKT  180
CLIDNAGPVQ ISSPRNLGIK RRKSQAKKVV CIPAPAAANS RPSSGEVVPS DLWAWRKYGQ  240
KPIKGSPYPR GYYRCSSSKG CSARKQVERS RTDPNMLVIT YTSEHNHPWP TQRNALAGST  300
RSQPLKNNAG ASKSSPSSQA QKTTNTKEEQ KESNNDTLSP TFVCGSSTAS TSVKEEIEDI  360
EKQMEMDDAN QFSEGFPYRP AIQADSNQSE DFFADLGGIE TDPLDLLFSQ GFTPDEQKES  420
KALDPFGFFN WPGDTNTTTT TTTPNNNNNN NISFGETKRD S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B4e-25203291280Disease resistance protein RRS1
5w3x_D4e-25203291280Disease resistance protein RRS1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.06G051300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT8276120.0KT827612.1 Manihot esculenta WRKY transcription factor 37 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021615493.10.0probable WRKY transcription factor 14
SwissprotQ9SA801e-116WRK14_ARATH; Probable WRKY transcription factor 14
TrEMBLA0A140H8P10.0A0A140H8P1_MANES; WRKY transcription factor 37
STRINGcassava4.1_027742m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF54303454
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30650.11e-99WRKY DNA-binding protein 14
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Wei Y, et al.
    Genome-Wide Identification and Expression Analysis of the WRKY Gene Family in Cassava.
    Front Plant Sci, 2016. 7: p. 25
    [PMID:26904033]