PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Manes.06G035600.1.p

Organism

Manihot esculenta

Taxonomic ID

3983

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

G2-like

Protein Properties

Length: 337aa MW: 36807.3 Da PI: 6.9024

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.06G035600.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	107.8	6e-34	49	103	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+rlrWt+eLHerFv+av+qLGG+++AtPk +l++m+v+gLt++hvkSHLQkYRl Manes.06G035600.1.p 49 KQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRL 103 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	14.485	46	106	IPR017930	Myb domain
SuperFamily	SSF46689	8.24E-18	48	103	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.2E-32	48	104	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.3E-25	49	104	IPR006447	Myb domain, plants
Pfam	PF00249	1.4E-9	51	102	IPR001005	SANT/Myb domain
Pfam	PF14379	1.8E-23	135	181	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 337 aa Download sequence Send to blast
MYQPKCIPSS SLVHKSSLVH GQYLDCGANS MDPISGGNSL NSNPTLASKQ RLRWTHELHE 60 RFVDAVAQLG GPDRATPKGV LRVMGVQGLT IYHVKSHLQK YRLAKYLPDS SSDGKKADKK 120 ETGDMLSNVD GSSGMQITEA LKLQMEVQKR LHEQLEVQRQ LQLRIEAQGK YLKKIIEEQQ 180 RLSGVLGEVP VQGASAPISG DNCPESDHKT DPATPAPTSE SPVQDQVGKE CTSTKSLSID 240 ESFSSRHEPL TPDSRCNVGS QSESPKGERS LKKQRVCVGA AYSKSEMVLT HQILESSLNS 300 YPQPHSVFMA REQFDPSSGL SIGNEDEMEK VPGNDL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	1e-23	49	106	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	1e-23	49	106	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	1e-23	49	106	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	1e-23	49	106	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	1e-23	49	106	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	1e-23	49	106	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	1e-23	49	106	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	1e-23	49	106	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	1e-23	49	106	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	1e-23	49	106	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	1e-23	49	106	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	1e-23	49	106	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00252	DAP	Transfer from AT2G01060	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.06G035600.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021616211.1	0.0	myb family transcription factor PHL7-like isoform X1
Swissprot	Q9SJW0	1e-137	PHL7_ARATH; Myb family transcription factor PHL7
TrEMBL	A0A2C9VNY0	0.0	A0A2C9VNY0_MANES; Uncharacterized protein
STRING	cassava4.1_011390m	0.0	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF8610	33	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01060.1	1e-115	G2-like family protein

Link Out ? help Back to Top
Phytozome	Manes.06G035600.1.p