PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.06G007300.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family WOX
Protein Properties Length: 388aa    MW: 44135.1 Da    PI: 6.831
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.06G007300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox681.2e-2181140357
                          --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
             Homeobox   3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                          +R+++t+eql++Leel+++ +r+psae+++ ++++l    +++ ++V++WFqN++a+e++
  Manes.06G007300.1.p  81 SRWNPTPEQLRTLEELYRRgTRTPSAEQIQNITAQLrrygKIEGKNVFYWFQNHKARERQ 140
                          7*****************99**************************************97 PP
2Wus_type_Homeobox114.84.1e-3780142365
    Wus_type_Homeobox   3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                          ++RW+PtpeQ++ Leely++G+rtP++e+iq+ita+L++yGkie+kNVfyWFQN+kaRerqk+
  Manes.06G007300.1.p  80 SSRWNPTPEQLRTLEELYRRGTRTPSAEQIQNITAQLRRYGKIEGKNVFYWFQNHKARERQKR 142
                          79***********************************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007111.30576141IPR001356Homeobox domain
SMARTSM003899.1E-578145IPR001356Homeobox domain
SuperFamilySSF466899.41E-1280146IPR009057Homeodomain-like
PfamPF000462.4E-1981140IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.7E-881140IPR009057Homeodomain-like
CDDcd000862.73E-682142No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048513Biological Processanimal organ development
GO:0099402Biological Processplant organ development
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 388 aa     Download sequence    Send to blast
MWMMGYNDGG ELNMADSFNG RKLRPLVPRT PPVPSPNTTS SSSPPRLSRI HGNDFFSLNH  60
HLATMADQSK REFHTQPVVS SRWNPTPEQL RTLEELYRRG TRTPSAEQIQ NITAQLRRYG  120
KIEGKNVFYW FQNHKARERQ KRRRQMESEA PEHQHQQQNR DIEIFERKES GANRTAYEVE  180
QTKNWAPSSN CSTLLEEDMT IQREAKGVVA ECRGEGWTQY ENEVELQHRR NYIMERNATW  240
QMMQLSCPST THLINTSSGT CTITTTTATI LAEEAEATTS TVAAETIRTM DPNRQLIKTH  300
TGLNIFIAPY IENNIGQHGL IHHFSNEEDH NGCGDSHQTL QLFPLRNGGG GECIHDKETE  360
TSSAVAAAMN ANFATPCQFF EFLPLKN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.06G007300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021615394.10.0WUSCHEL-related homeobox 1-like
TrEMBLA0A2C9VLM40.0A0A2C9VLM4_MANES; Uncharacterized protein
STRINGcassava4.1_026231m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28923471
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18010.13e-52WUSCHEL related homeobox 1