PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.05G177900.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family MYB
Protein Properties Length: 290aa    MW: 31231 Da    PI: 8.1158
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.05G177900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding61.22.2e-191358147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                         +g+W++eEd+ l+++v+ +G ++W++I++ ++ gR++k+c++rw + 
  Manes.05G177900.1.p 13 KGPWSPEEDQALKRLVQNHGARNWSLISKSIP-GRSGKSCRLRWCNQ 58
                         79******************************.***********985 PP
2Myb_DNA-binding57.33.6e-1867109347
                          SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          ++++eEde +++a++++G++ W+tIar ++ gRt++ +k++w++ 
  Manes.05G177900.1.p  67 PFSPEEDEAIIQAHARFGNK-WATIARLLN-GRTDNAIKNHWNST 109
                          89******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129425.705863IPR017930Myb domain
SuperFamilySSF466892.16E-3210106IPR009057Homeodomain-like
SMARTSM007176.9E-171261IPR001005SANT/Myb domain
PfamPF002494.8E-191358IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.5E-271466IPR009057Homeodomain-like
CDDcd001671.72E-161557No hitNo description
SMARTSM007171.2E-1564112IPR001005SANT/Myb domain
PROSITE profilePS5129421.94265114IPR017930Myb domain
PfamPF002491.6E-1567109IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.3E-2467113IPR009057Homeodomain-like
CDDcd001674.70E-1367110No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MASTDREEIG RIKGPWSPEE DQALKRLVQN HGARNWSLIS KSIPGRSGKS CRLRWCNQLS  60
PEVEHRPFSP EEDEAIIQAH ARFGNKWATI ARLLNGRTDN AIKNHWNSTL KRKCSSLFED  120
LSDDAHAQVQ QPLKRSASVG AATVSGLQLN PSSPSGSDVS DSSLPGMASS PVYRPLARTG  180
SLQAGLSIDA ASSTTDPPTS LSLSLPGSDS FEASNQVSII GSGSGFNHGV TPIHVVQTQL  240
VLPTAVPVEQ AATTQQNGVG FEKQFFRPEF LAMVQEMIRK EVGRYMSGI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C1e-40121143105C-Myb DNA-Binding Domain
1msf_C1e-40121143105C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that functions in salt stress response. Acts as negative regulator of NHX7/SOS1 and CBL4/SOS3 induction in response to salt stress (PubMed:23809151). In response to auxin, activates the transcription of the auxin-responsive gene IAA19. The IAA19 transcription activation by MYB73 is enhanced by direct interaction between MYB73 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:23809151, ECO:0000269|PubMed:24894996}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.05G177900.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress. {ECO:0000269|PubMed:23809151}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021613222.10.0transcription factor MYB44-like
SwissprotO231602e-91MYB73_ARATH; Transcription factor MYB73
TrEMBLA0A2C9VYM70.0A0A2C9VYM7_MANES; Uncharacterized protein
STRINGcassava4.1_023141m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF84334124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37260.14e-73myb domain protein 73
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]