PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.05G170200.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | MYB | ||||||||
Protein Properties | Length: 238aa MW: 26439.5 Da PI: 9.6297 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 58.4 | 1.6e-18 | 37 | 82 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W+++Ed +l ++v+++G+++W++I+r++ gR++k+c++rw + Manes.05G170200.1.p 37 KGPWSADEDRILTRLVERHGPRNWSLISRYIK-GRSGKSCRLRWCNQ 82 79*****************************9.***********985 PP | |||||||
2 | Myb_DNA-binding | 54.3 | 3.1e-17 | 91 | 133 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++++ Ede ++ a++++G++ W+tIar ++ gRt++ +k++w++ Manes.05G170200.1.p 91 PFSPAEDETILAAHARYGNR-WATIARFLP-GRTDNAVKNHWNST 133 79******************.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 24.773 | 32 | 87 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.58E-31 | 34 | 130 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.1E-16 | 36 | 85 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.2E-17 | 37 | 82 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.3E-24 | 38 | 90 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 9.99E-15 | 39 | 81 | No hit | No description |
SMART | SM00717 | 2.8E-15 | 88 | 136 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 20.746 | 89 | 138 | IPR017930 | Myb domain |
Pfam | PF00249 | 2.0E-14 | 91 | 133 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.58E-12 | 91 | 134 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 6.4E-23 | 91 | 137 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 238 aa Download sequence Send to blast |
MGAMNMCSTS SDSSTSEFSF NGNVTTPRNV NKLERIKGPW SADEDRILTR LVERHGPRNW 60 SLISRYIKGR SGKSCRLRWC NQLSPNVEHR PFSPAEDETI LAAHARYGNR WATIARFLPG 120 RTDNAVKNHW NSTLKRRARE QQHQMMMEGS FDNSSIGVGV VAAAPASTPR NEEEEVLTAL 180 TLAPPGINGS SSNGRKEAER KAESLPAGFW DVIRNVIAGE VREYMSSTIN ESSWGFN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 7e-40 | 34 | 138 | 1 | 105 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.05G170200.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021614419.1 | 1e-176 | transcription factor MYB44-like | ||||
TrEMBL | A0A2C9VYF4 | 1e-174 | A0A2C9VYF4_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_031637m | 1e-175 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5074 | 32 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37260.1 | 3e-58 | myb domain protein 73 |
Link Out ? help Back to Top | |
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Phytozome | Manes.05G170200.1.p |