PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Manes.05G162100.1.p

Organism

Manihot esculenta

Taxonomic ID

3983

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

C2H2

Protein Properties

Length: 496aa MW: 52567.4 Da PI: 8.9904

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.05G162100.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.2	1.4e-05	67	89	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H Manes.05G162100.1.p 67 FVCEICNKGFQRDQNLQLHRRGH 89 89*******************88 PP
2	zf-C2H2	14.7	8.8e-05	143	165	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC+ C+k + +s+ k H++ + Manes.05G162100.1.p 143 WKCERCSKNYAVQSDWKAHMKIC 165 58*******************87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.4E-7	66	89	No hit	No description
Gene3D	G3DSA:3.30.160.60	1.9E-5	66	89	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
Pfam	PF12171	7.9E-5	67	89	IPR022755	Zinc finger, double-stranded RNA binding
SMART	SM00355	0.017	67	89	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.949	67	89	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	69	89	IPR007087	Zinc finger, C2H2
SMART	SM00355	250	108	138	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	7.3E-5	131	164	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	1.4E-7	138	164	No hit	No description
SMART	SM00355	130	143	163	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 496 aa Download sequence Send to blast
MVEVENSSQM TFSIASGEAN NVSNFGNQAP PLSAPLPKKK RNLPGMPDPD AEVVALSPKT 60 LLASNRFVCE ICNKGFQRDQ NLQLHRRGHN LPWKLKQRTS REPRKQVYVC PEPACVHHNP 120 ARALGDLTGI KKHFCRKHGE KKWKCERCSK NYAVQSDWKA HMKICGSREY KCDCGSLFSR 180 RDSFITHRAF CDVLAEESAR AKTLTIMDKE RNTNLKNVIA SPPSPPLTPS TTVVSSGVLV 240 QSSELAENPV GHSVSTPATA CLNATIPSSR SSSSISNVFA SVFASSAMAA VISQASSTSL 300 SNFLCALPHS DCPTTIQTHR AAEPPSLSLS SSFYLSNNAS FFPDQDHRHY TLSPQPAMSA 360 TALLQKAAQM GATSSNSSFL RGLGLPVSSS CSQDINGNQR DMKQDANAVA AGLGIGLPSG 420 DVMMGSSPLF GNKPTTLDLL GLGIGAGSAL LNSYGGSFNV GAAAVSAVAT PYGGGSSKET 480 WDAAAEKKPS GSALY*

Sequence ? help Back to Top

Protein Sequence Length: 496 aa Download sequence Send to blast

MVEVENSSQM TFSIASGEAN NVSNFGNQAP PLSAPLPKKK RNLPGMPDPD AEVVALSPKT  60
LLASNRFVCE ICNKGFQRDQ NLQLHRRGHN LPWKLKQRTS REPRKQVYVC PEPACVHHNP  120
ARALGDLTGI KKHFCRKHGE KKWKCERCSK NYAVQSDWKA HMKICGSREY KCDCGSLFSR  180
RDSFITHRAF CDVLAEESAR AKTLTIMDKE RNTNLKNVIA SPPSPPLTPS TTVVSSGVLV  240
QSSELAENPV GHSVSTPATA CLNATIPSSR SSSSISNVFA SVFASSAMAA VISQASSTSL  300
SNFLCALPHS DCPTTIQTHR AAEPPSLSLS SSFYLSNNAS FFPDQDHRHY TLSPQPAMSA  360
TALLQKAAQM GATSSNSSFL RGLGLPVSSS CSQDINGNQR DMKQDANAVA AGLGIGLPSG  420
DVMMGSSPLF GNKPTTLDLL GLGIGAGSAL LNSYGGSFNV GAAAVSAVAT PYGGGSSKET  480
WDAAAEKKPS GSALY*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	7e-34	139	205	3	69	Zinc finger protein JACKDAW
5b3h_F	7e-34	139	205	3	69	Zinc finger protein JACKDAW
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor promoting the transition to germination by regulating light and hormonal signaling during seed maturation (PubMed:21571950). Acts as a positive regulator of phytochrome and/or gibberellin action (PubMed:21571950, PubMed:25035403). {ECO:0000269\|PubMed:21571950, ECO:0000269\|PubMed:25035403}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.05G162100.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021611582.1	0.0	protein indeterminate-domain 2-like
Swissprot	Q9LVQ7	1e-141	IDD1_ARATH; Zinc finger protein ENHYDROUS
TrEMBL	A0A2C9VY75	0.0	A0A2C9VY75_MANES; Uncharacterized protein
STRING	cassava4.1_006226m	0.0	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2218	32	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66730.1	1e-110	C2H2-like zinc finger protein

Link Out ? help Back to Top
Phytozome	Manes.05G162100.1.p

Publications ? help Back to Top
Fukazawa J, et al. DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis. Plant Cell, 2014. 26(7): p. 2920-38 [PMID:25035403] Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]