PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.05G139200.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family MYB
Protein Properties Length: 294aa    MW: 31769.5 Da    PI: 6.8434
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.05G139200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.32e-09656347
                         SS-HHHHHHHHHHHHHTTTT.......-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding  3 rWTteEdellvdavkqlGgg.......tWktIartmgkgRtlkqcksrwqky 47
                         +W+ eE++ + +a++++ ++        W+ Ia+ ++ +++  ++k+++q +
  Manes.05G139200.1.p  6 SWSREEEKAFENAIAKHWTEeedeseeLWEMIASLVP-TKSVQELKLHYQLL 56
                         5************************************.***********965 PP
2Myb_DNA-binding391.9e-12133177347
                          SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          +WT+eE+ l++ +  ++G+g+W++I+r +   Rt+ q+ s+ qky
  Manes.05G139200.1.p 133 PWTEEEHRLFLLGLDKFGKGDWRSISRNFVISRTPTQVASHAQKY 177
                          7*****************************99************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512938.003161IPR017884SANT domain
SMARTSM007176.6E-5359IPR001005SANT/Myb domain
SuperFamilySSF466891.66E-8663IPR009057Homeodomain-like
CDDcd001675.10E-6657No hitNo description
Gene3DG3DSA:1.10.10.604.3E-4654IPR009057Homeodomain-like
PfamPF002492.3E-6655IPR001005SANT/Myb domain
PROSITE profilePS5129417.441125182IPR017930Myb domain
SuperFamilySSF466893.45E-17128183IPR009057Homeodomain-like
TIGRFAMsTIGR015571.4E-17129180IPR006447Myb domain, plants
SMARTSM007172.3E-10130180IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.2E-11131176IPR009057Homeodomain-like
CDDcd001679.46E-10133178No hitNo description
PfamPF002497.1E-11133177IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009733Biological Processresponse to auxin
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MESEISWSRE EEKAFENAIA KHWTEEEDES EELWEMIASL VPTKSVQELK LHYQLLVEDV  60
NAIEAGNIPL PNYVGEETSS SAKDSHGISG AVAAEKRLNC GYGSGFLGLG HNSSGHGGKG  120
GSRSDQERKK GIPWTEEEHR LFLLGLDKFG KGDWRSISRN FVISRTPTQV ASHAQKYFIR  180
LNSMNRDRRR SSIHDITSVN NGDVSSNQPP ITGQQANSNP AAAAAMGSKV KHSVQPHMPG  240
LGIYGAPVGH PVAAPPGHMG SAVGTPVMLP HGHHPPYVVP VAYPVAPPQT MHQ*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to 5'-TATCCA-3' elements in gene promoters. Derepresses strongly the sugar-repressed transcription of promoters containing SRS or 5'-TATCCA-3' elements. Functions with GAMYB to integrate diverse nutrient starvation and gibberellin (GA) signaling pathways during germination of grains. Sugar, nitrogen and phosphate starvation signals converge and interconnect with GA to promote the co-nuclear import of MYBS1 and GAMYB, resulting in the expression of a large set of GA-inducible hydrolases, transporters, and regulators that are essential for mobilization of nutrient reserves in the endosperm to support seedling growth (PubMed:22773748). {ECO:0000269|PubMed:12172034, ECO:0000269|PubMed:22773748}.
UniProtTranscription activator that binds to 5'-TATCCA-3' elements in gene promoters. Derepress strongly the sugar-repressed transcription of promoters containing SRS or 5'-TATCCA-3' elements. {ECO:0000250|UniProtKB:Q8LH59}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00191DAPTransfer from AT1G49010Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.05G139200.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by sucrose and gibberellic acid (GA). {ECO:0000269|PubMed:12172034}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021611780.10.0transcription factor MYBS1
SwissprotB8A9B23e-85MYBS1_ORYSI; Transcription factor MYBS1
SwissprotQ8LH593e-85MYBS1_ORYSJ; Transcription factor MYBS1
TrEMBLA0A2C9VXH10.0A0A2C9VXH1_MANES; Uncharacterized protein
STRINGcassava4.1_013010m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF106943340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49010.12e-63MYB family protein
Publications ? help Back to Top
  1. Hong YF, et al.
    Convergent starvation signals and hormone crosstalk in regulating nutrient mobilization upon germination in cereals.
    Plant Cell, 2012. 24(7): p. 2857-73
    [PMID:22773748]