PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.05G101300.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family ZF-HD
Protein Properties Length: 300aa    MW: 32980.6 Da    PI: 7.6163
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.05G101300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer105.43.5e-3344102259
          ZF-HD_dimer   2 ekvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRrevee 59 
                          + v YkeClkNhAa+lGg a+DGCgEfmps++++ +++++lkCaACgCHRnFHRr++ +
  Manes.05G101300.1.p  44 MVVSYKECLKNHAATLGGLALDGCGEFMPSPTATpSDPTSLKCAACGCHRNFHRRDSRT 102
                          5789******************************9********************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257742.0E-164499IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047701.8E-2746100IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015661.1E-294899IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152326.0834899IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466894.28E-17171246IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.6E-27175246IPR009057Homeodomain-like
TIGRFAMsTIGR015657.0E-27184241IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MDLTQYSKSS ESDTDIKTPL QTHLSRALSL SDGSLNPQPS PLQMVVSYKE CLKNHAATLG  60
GLALDGCGEF MPSPTATPSD PTSLKCAACG CHRNFHRRDS RTHQPLPPTA ALQWTSSPSP  120
GQTSSGLSPS PTPNSPESPT PQQSVYPSAP HMLLALSTGL SEPFDENQHQ NPSLNSTVMN  180
PHGRKRARTK FTDEQKEKMY AFAEKLGWKM LRGNEEKMVE EFCSEVGVKR NVFKVWMHNN  240
KHRKEKNIAN GNEDRVGFDI FNCNSNNING STYDSFTRHQ IENKVQVHGD SPDGSSHSS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A1e-181852421874ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the up-regulation of several stress-inducible genes. Acts as a transcriptional activator by interacting with MED25 and NAC proteins. Involved in increased drought tolerance. {ECO:0000269|PubMed:16428600, ECO:0000269|PubMed:17233795}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.05G101300.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by abscisic acid and by drought and salt stress. Not induced by cold. {ECO:0000269|PubMed:17233795}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021612133.10.0zinc-finger homeodomain protein 11-like
SwissprotQ9SEZ12e-63ZHD11_ARATH; Zinc-finger homeodomain protein 11
TrEMBLA0A2C9VUZ00.0A0A2C9VUZ0_MANES; Uncharacterized protein
STRINGcassava4.1_012790m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19793188
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69600.12e-51zinc finger homeodomain 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]