PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.05G096100.2.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family HD-ZIP
Protein Properties Length: 297aa    MW: 33465.4 Da    PI: 4.3036
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.05G096100.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.61e-1880134357
                          --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
             Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                          k++++t++q++ Le+ Fe ++++  e++ +LAk+lgL+ rqV +WFqNrRa+ k+
  Manes.05G096100.2.p  80 KKRRLTASQVQFLERNFEVENKLEPERKIQLAKELGLQPRQVAIWFQNRRARFKN 134
                          56689***********************************************995 PP
2HD-ZIP_I/II123.11.3e-3980169291
          HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                          kkrrl++ qv++LE++Fe e+kLeperK +la+eLglqprqva+WFqnrRAR+k+kqlEk+y++Lk++yd+lk + ++L ke+e+L+++l
  Manes.05G096100.2.p  80 KKRRLTASQVQFLERNFEVENKLEPERKIQLAKELGLQPRQVAIWFQNRRARFKNKQLEKNYDSLKTSYDKLKLDYDNLLKENENLKNQL 169
                          9**************************************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.15E-1970137IPR009057Homeodomain-like
PROSITE profilePS5007117.10375135IPR001356Homeobox domain
SMARTSM003896.6E-1877139IPR001356Homeobox domain
CDDcd000861.36E-1778136No hitNo description
PfamPF000463.8E-1680133IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.4E-1982142IPR009057Homeodomain-like
PRINTSPR000316.4E-6106115IPR000047Helix-turn-helix motif
PROSITE patternPS000270110133IPR017970Homeobox, conserved site
PRINTSPR000316.4E-6115131IPR000047Helix-turn-helix motif
PfamPF021836.7E-12135169IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MAGGKVCDGS NMTVLLQNDT LPCDSLWIPT SPATLPAPKS VIDFENDGRE DTMDTPFFQA  60
LVKEESGDED FDVCLNPPGK KRRLTASQVQ FLERNFEVEN KLEPERKIQL AKELGLQPRQ  120
VAIWFQNRRA RFKNKQLEKN YDSLKTSYDK LKLDYDNLLK ENENLKNQLL AGEKGLRNLE  180
PVEAMNPPDA ELGNPVAKTV SEVVSNAPLL ILKQEEASSA KSDVFDSDSP HSLLEPGDSS  240
HVFEPDHSDF SQDEEDELGR SLLPTPLFPK LYQDLPANSC SFEFPVEDQP FWSWTY*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1127135RRARFKNKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.05G096100.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021612147.10.0homeobox-leucine zipper protein HAT5-like isoform X2
TrEMBLA0A2C9VUV80.0A0A2C9VUV8_MANES; Uncharacterized protein
STRINGcassava4.1_012634m0.0(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.15e-31homeobox 1