PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Manes.05G049500.1.p

Organism

Manihot esculenta

Taxonomic ID

3983

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

C2H2

Protein Properties

Length: 357aa MW: 41080.7 Da PI: 6.2461

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.05G049500.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.3	0.00053	4	26	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C k+Fs+ L H+r+H Manes.05G049500.1.p 4 HRCKLCFKTFSNGRALGGHMRSH 26 79********************9 PP
2	zf-C2H2	13.2	0.00026	227	249	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+k+F++ L H +H Manes.05G049500.1.p 227 YRCETCKKVFKSYQALGGHRASH 249 9************9999998887 PP
3	zf-C2H2	13.1	0.00029	280	302	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp+C ++Fs+ L H r+H Manes.05G049500.1.p 280 HECPYCYRVFSSGQALGGHKRSH 302 79******************999 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13912	1.2E-6	3	27	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	5.88E-5	3	30	No hit	No description
PROSITE profile	PS50157	10.492	4	31	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.039	4	26	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	6	26	IPR007087	Zinc finger, C2H2
Pfam	PF13912	6.3E-11	227	251	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	10.076	227	254	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	1.38E-7	227	302	No hit	No description
SMART	SM00355	0.026	227	249	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	229	249	IPR007087	Zinc finger, C2H2
Pfam	PF13912	6.6E-13	280	303	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.2	280	302	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	9.39	280	302	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	282	302	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0044212	Molecular Function	transcription regulatory region DNA binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 357 aa Download sequence Send to blast
MERHRCKLCF KTFSNGRALG GHMRSHMLNL PIPPKLEDEE KEEHPPIQLC EDTESASSSE 60 EEAEEEDKSL CYELRENPKR SIRLVDPEFS FAADAASVLQ DRESETESSK NTTHRRRSKR 120 TRKLLEHEYH QQQHRQEHEN NIKKLNFSKF SKNELWAEPE PVSSISETTT EEDVAFCLMM 180 LSRDKWKKLE QQNQREEDEE VEDEKSIEET DESDEFKSCK TRTRGKYRCE TCKKVFKSYQ 240 ALGGHRASHK KLKVYTPTKE PNLQPLNAGT SSSAREKKIH ECPYCYRVFS SGQALGGHKR 300 SHLIGVTATP ARSSSKIEDN LNLIDLNLPA PVDDDELSQI ELSAVSDAEF VNHIKR*

Sequence ? help Back to Top

Protein Sequence Length: 357 aa Download sequence Send to blast

MERHRCKLCF KTFSNGRALG GHMRSHMLNL PIPPKLEDEE KEEHPPIQLC EDTESASSSE  60
EEAEEEDKSL CYELRENPKR SIRLVDPEFS FAADAASVLQ DRESETESSK NTTHRRRSKR  120
TRKLLEHEYH QQQHRQEHEN NIKKLNFSKF SKNELWAEPE PVSSISETTT EEDVAFCLMM  180
LSRDKWKKLE QQNQREEDEE VEDEKSIEET DESDEFKSCK TRTRGKYRCE TCKKVFKSYQ  240
ALGGHRASHK KLKVYTPTKE PNLQPLNAGT SSSAREKKIH ECPYCYRVFS SGQALGGHKR  300
SHLIGVTATP ARSSSKIEDN LNLIDLNLPA PVDDDELSQI ELSAVSDAEF VNHIKR*

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00416	DAP	Transfer from AT3G60580	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.05G049500.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021612301.1	0.0	zinc finger protein ZAT4-like
TrEMBL	A0A2C9VUU9	0.0	A0A2C9VUU9_MANES; Uncharacterized protein
STRING	cassava4.1_031439m	0.0	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF767	34	122

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45120.1	2e-54	C2H2-like zinc finger protein

Link Out ? help Back to Top
Phytozome	Manes.05G049500.1.p