PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.05G037100.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family MYB
Protein Properties Length: 308aa    MW: 33960.1 Da    PI: 7.6398
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.05G037100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.71.1e-171461148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g+WT+eEde+l+ ++k+ G g+W++ ++  g+ R++k+c++rw +yl
  Manes.05G037100.1.p 14 KGPWTPEEDEILISYIKKNGHGSWRSLPKLAGLLRCGKSCRLRWTNYL 61
                         79******************************99************97 PP
2Myb_DNA-binding48.12.8e-1567112148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          rg++T eE++l ++++  lG++ W++Ia+ ++ gRt++++k+ w+++l
  Manes.05G037100.1.p  67 RGPFTLEEEKLVIQLHGILGNR-WAAIASQLP-GRTDNEIKNLWNTHL 112
                          89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.3E-25564IPR009057Homeodomain-like
PROSITE profilePS5129425.041965IPR017930Myb domain
SuperFamilySSF466891.21E-3011108IPR009057Homeodomain-like
SMARTSM007174.1E-141363IPR001005SANT/Myb domain
PfamPF002493.2E-161461IPR001005SANT/Myb domain
CDDcd001673.84E-111661No hitNo description
Gene3DG3DSA:1.10.10.603.2E-2565116IPR009057Homeodomain-like
PROSITE profilePS5129419.74466116IPR017930Myb domain
SMARTSM007173.0E-1466114IPR001005SANT/Myb domain
PfamPF002493.8E-1467112IPR001005SANT/Myb domain
CDDcd001672.07E-1069112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0009909Biological Processregulation of flower development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MGRTPCCDKK GLKKGPWTPE EDEILISYIK KNGHGSWRSL PKLAGLLRCG KSCRLRWTNY  60
LRPDIKRGPF TLEEEKLVIQ LHGILGNRWA AIASQLPGRT DNEIKNLWNT HLKKRLLCMG  120
LDPQTHEPFT SCGPAIKAPA SPATRHMAQW ESARLEAEAR LSRESSLFNP PTPGKSDNDY  180
FLRIWNSEVG DSFRKFNQAD KTTRKSPASA SQASSSTKCG SVSAVTADIS PNLAGCSTTA  240
RNQNEDTECK SCKSYAEDLN AGSDSSSSLE LEDSSDSTLQ LLLDFPINND MSFLEENMDG  300
YATYSAM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-29121165108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may play a role in flower development by repressing ANT (PubMed:19232308). Regulates the transition of meristem identity from vegetative growth to flowering. Acts downstream of LFY and upstream of AP1. Directly activates AP1 to promote floral fate. Together with LFY and AP1 may constitute a regulatory network that contributes to an abrupt and robust meristem identity transition (PubMed:21750030). {ECO:0000269|PubMed:19232308, ECO:0000269|PubMed:21750030}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00114ampDAPTransfer from AT3G61250Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.05G037100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021613854.10.0transcription factor MYB41-like isoform X1
SwissprotQ9M2D91e-135MYB17_ARATH; Transcription factor MYB17
TrEMBLA0A251KT060.0A0A251KT06_MANES; Uncharacterized protein
STRINGcassava4.1_030831m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23313280
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61250.11e-123myb domain protein 17