PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.05G026200.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | ERF | ||||||||
Protein Properties | Length: 305aa MW: 35102.1 Da PI: 5.0787 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.6 | 7.3e-19 | 105 | 155 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55 ++y+GVr+++ +gr++AeIrd + r +r++lg+f+taeeAa +++a+ k++g Manes.05G026200.1.p 105 KKYRGVRQRP-WGRFAAEIRDpF-----RrTRVWLGTFDTAEEAAMVYDRAAIKIKG 155 59********.**********66.....45***********************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 3.50E-33 | 105 | 162 | No hit | No description |
Pfam | PF00847 | 9.7E-13 | 106 | 155 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.3E-29 | 106 | 163 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.695 | 106 | 163 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.23E-21 | 106 | 162 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 2.2E-35 | 106 | 169 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.2E-10 | 107 | 118 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.2E-10 | 129 | 145 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 305 aa Download sequence Send to blast |
MKTSSVKYTE HKKVTNKLVK CNDSNSTRVV RIYVTDGDAT DSSSDENDNF ISTHQRVKKH 60 INEIRIEDCV EYATGRASSD NSKSRFNKQM LRKNTRDQRY YPEGKKYRGV RQRPWGRFAA 120 EIRDPFRRTR VWLGTFDTAE EAAMVYDRAA IKIKGSNALT NFIKPPVRTS PPDFDIAASS 180 GYDSGMESHS LSSPTSVLRF QFTEEVGNEP QVLNGNVSRP VGEMKEKKWD WRLDQGIEEK 240 EWRPIQCVRE EDPTDNCFEE LVDIENYAPI LLDEYIIPDT VLTKDFVDVD GDFGSCLWDL 300 DEYF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 5e-24 | 103 | 170 | 2 | 67 | ATERF1 |
3gcc_A | 5e-24 | 103 | 170 | 2 | 67 | ATERF1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.05G026200.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021612442.1 | 0.0 | ethylene-responsive transcription factor CRF6-like | ||||
TrEMBL | A0A2C9VST0 | 0.0 | A0A2C9VST0_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_023883m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF450 | 34 | 161 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G27950.1 | 3e-49 | cytokinin response factor 4 |
Link Out ? help Back to Top | |
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Phytozome | Manes.05G026200.1.p |