PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.05G004100.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family GRAS
Protein Properties Length: 596aa    MW: 67916.6 Da    PI: 7.1494
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.05G004100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS268.42.3e-822125801374
                 GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl....fse 86 
                          l +lLl++Ae v  ++  +a++lL+r + +a ++++p+qR++ +f+eAL++r+ + + +  ++ +  + +  +   +     l    f++
  Manes.05G004100.1.p 212 LAHLLLAAAEKVGYQQYDRANRLLTRCEWIAYERANPVQRVVYCFAEALRERIDKATGRFTQKERQAKCEIAHGLGTN----LavldFHQ 297
                          579****************************************************33333222222222222222222....24556*** PP

                 GRAS  87 vsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesgskeeleetgerLakfAeelgvp 175
                            P+ ++++lt  qaI+e + +++++H iD++i  G+QW a++qaLa+R+ ++  +l++T+vg   +g ++++eetg+ L++fA++++ p
  Manes.05G004100.1.p 298 SVPFNQITQLTSIQAIMENIGSARKLHAIDLEIRSGVQWTAMMQALAEREqRPLEHLKVTAVGL--TGIHNKIEETGRSLERFAKSMNFP 385
                          *************************************************945556*********..77********************** PP

                 GRAS 176 fefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyys 265
                          f f+++++++++d++ + +++ p+E+l+V + + l +l +++ +le+    +++++k+l+P ++vv+e ea+hns+ F++rf+eal +ys
  Manes.05G004100.1.p 386 FTFKAIYVSNVNDIKEDLFEIAPDEVLVVVSNMFLRTLISNPDCLEN----LMRVIKNLNPSIMVVTEVEANHNSPIFVNRFIEALFFYS 471
                          ***************************************99999999....*************************************** PP

                 GRAS 266 alfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveee 354
                          a fd+le+ + ++ e++  vE++ +   i+++va   +er++r  +   Wr+ ++++ + ++ +se+   qa l+ ++++ +   +++++
  Manes.05G004100.1.p 472 AYFDCLETCMKQNIENKLIVEAA-FCHGIREIVAVGDNERIARSVKIDVWRAFFSRFRMVEIGFSESSLYQATLVPKQFPcGSSCSLDKN 560
                          **********9999*******99.99******************************************************9999****** PP

                 GRAS 355 sgslvlgWkdrpLvsvSaWr 374
                           ++l+ gWk+ +L s+SaW+
  Manes.05G004100.1.p 561 GKCLLVGWKGTTLHSLSAWK 580
                          *******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098538.664186559IPR005202Transcription factor GRAS
PfamPF035148.0E-80212580IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 596 aa     Download sequence    Send to blast
MANALFSFTP FDFNGIQGDY LPQHYEKGEA VIKEKQNPLF SMEELGQVYP ICSEYGAYQD  60
DTTSNKGLHF FKDQQQQPPP PKSNCLTLDE YFGSCFPAPA QPIQKLNKSE INIAKPNKES  120
PHPFVLSSSL ELLNNYGSSI KKLNMNQFNN ASNQTHRVET RKKLSTEEVM RVAGARYIQF  180
SDPRYDDFSM LMHPFGYALS GLSEEETRDV ELAHLLLAAA EKVGYQQYDR ANRLLTRCEW  240
IAYERANPVQ RVVYCFAEAL RERIDKATGR FTQKERQAKC EIAHGLGTNL AVLDFHQSVP  300
FNQITQLTSI QAIMENIGSA RKLHAIDLEI RSGVQWTAMM QALAEREQRP LEHLKVTAVG  360
LTGIHNKIEE TGRSLERFAK SMNFPFTFKA IYVSNVNDIK EDLFEIAPDE VLVVVSNMFL  420
RTLISNPDCL ENLMRVIKNL NPSIMVVTEV EANHNSPIFV NRFIEALFFY SAYFDCLETC  480
MKQNIENKLI VEAAFCHGIR EIVAVGDNER IARSVKIDVW RAFFSRFRMV EIGFSESSLY  540
QATLVPKQFP CGSSCSLDKN GKCLLVGWKG TTLHSLSAWK FSRERLGRFF ANYRF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-3222057927378Protein SCARECROW
5b3h_A1e-3222057926377Protein SCARECROW
5b3h_D1e-3222057926377Protein SCARECROW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.05G004100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021613016.10.0DELLA protein RGL1-like
TrEMBLA0A2C9VTI70.0A0A2C9VTI7_MANES; Uncharacterized protein
STRINGcassava4.1_024370m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47933162
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03450.12e-53RGA-like 2