PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.04G155200.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family C2H2
Protein Properties Length: 275aa    MW: 29631.4 Da    PI: 7.5503
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.04G155200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.30.00012104126123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ++C+ C++ Fs++  L  H++ H
  Manes.04G155200.1.p 104 FTCNFCKREFSTSQALGGHQNAH 126
                          89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.61E-6101131No hitNo description
Gene3DG3DSA:3.30.160.603.2E-4102130IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.531104131IPR007087Zinc finger, C2H2
PROSITE patternPS000280106126IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MDPVPAVAVH QQSSSSDASS MSATSQAADH DHGHSQMQKS EPPPAATSTH ESSSHVLLDL  60
KLSTDDSVRG SKFELNLFTP VTANNESVTD HEKRSNPNDQ SRVFTCNFCK REFSTSQALG  120
GHQNAHKQER AIAKRRQGMD LVGGFGHLSY DYPYSSLSTH HHPLYGSLKY SSSSSSSYPW  180
MSSGGAAHRY SHGGWPRLGF INNSGGFAVL SGSSSSRLIT ENKSTPFPNY LSASPSNIST  240
TIRTLYTGDH LRRAVDLSTN DQVDASGIDL SLKL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.04G155200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021609171.10.0zinc finger protein 3-like
TrEMBLA0A2C9W2W10.0A0A2C9W2W1_MANES; Uncharacterized protein
STRINGcassava4.1_026607m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18223074
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G24625.13e-18zinc finger protein 7