PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Manes.04G137800.1.p

Organism

Manihot esculenta

Taxonomic ID

3983

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

Dof

Protein Properties

Length: 254aa MW: 26979.4 Da PI: 8.4567

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.04G137800.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	127.9	3e-40	17	76	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++++lkcprCdstntkfCyynny+lsqPr+fCk+CrryWtkGGalrn+PvGgg+rkn k+ Manes.04G137800.1.p 17 EQEQLKCPRCDSTNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGALRNIPVGGGSRKNAKR 76 57899****************************************************886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-29	14	76	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.6E-33	19	75	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.544	21	75	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	23	59	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 254 aa Download sequence Send to blast
MQDPSSAFQP IKAQFPEQEQ LKCPRCDSTN TKFCYYNNYN LSQPRHFCKN CRRYWTKGGA 60 LRNIPVGGGS RKNAKRPSNQ KRSNPDSNTN TDPARLNRRV PEPSSSSTPP PTTTTPLTST 120 SQFVANGISD LGDPTRLYGL EADQDRKILD MSGSFSSLLA SNGQYGSIFE GLNPNGSGLK 180 MVHMGKFGED LNSGLNAGSG QSTGLDVQGS NTNDGGGSGG GSGGGESYLQ SGDWGNSNGW 240 PDLAIYTPGS SFQ*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.04G137800.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021609492.1	0.0	dof zinc finger protein DOF3.1-like
Swissprot	Q94AR6	3e-41	DOF31_ARATH; Dof zinc finger protein DOF3.1
TrEMBL	A0A2C9W4I2	0.0	A0A2C9W4I2_MANES; Uncharacterized protein
STRING	cassava4.1_015552m	1e-163	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6181	33	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51700.1	1e-41	DOF zinc finger protein 1

Link Out ? help Back to Top
Phytozome	Manes.04G137800.1.p

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]