PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Manes.04G111100.1.p

Organism

Manihot esculenta

Taxonomic ID

3983

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

FAR1

Protein Properties

Length: 666aa MW: 77008.2 Da PI: 8.299

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.04G111100.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	69.7	7.1e-22	60	143	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 ++Yn YAkevGF+vr+++s +++++e + + ++Cs +g+++ ++ + r r+etrtgC a++++++ ++++w+v ++ leHnH l Manes.04G111100.1.p 60 NYYNCYAKEVGFRVRVKNSWFKRNSREKYGAVLCCSSQGFKRIKDVN-----RLRKETRTGCPAMIRMRLVDSKRWRVLEVTLEHNHLL 143 69***************************************9988.....99*******************************87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	5.3E-19	60	143	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	8.0E-29	260	353	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.94	547	583	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	4.1E-4	555	579	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.1E-6	558	585	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 666 aa Download sequence Send to blast
MAEAPRGIEQ VPDNELIEHQ KVKDGEISEL HGENGMPEER KEFVPPAVGM EFESYDDAYN 60 YYNCYAKEVG FRVRVKNSWF KRNSREKYGA VLCCSSQGFK RIKDVNRLRK ETRTGCPAMI 120 RMRLVDSKRW RVLEVTLEHN HLLGAKIYKS IKKMGTGNKR KSQPSSDAEV RTIKLYRALV 180 IDAGGTGNSS PNAREIRNEL PNQLNLKKGD AQAIYNYLCR MQLTNPNFFY LMDLNDEGHL 240 RNVFWIDARS RAACGYFNDV IYFDNTYLSS KYEIPLVAFV GINHHGHSVL LGCGLLAGET 300 TESYIWLFKT WLTCLSGCAP QTIITDRCKV LQGAIAEAFP RSHHCFGLSH IMRRVPEKLG 360 GLLNYDAIRK ALIKAVYETL KVIEFEAAWG FMVQRFGVVD HEWLRSLYED RVRWAPVYLK 420 DTFFAGMSAA LPGEALNPFF DRYVHKQTPL KEFLDKYELA LQKKHKEETN ADIESRSSGP 480 MLKTRCSFEL QLSKLYTREI FKKFQFEVEE MYSCFSTTQI HVDGPIIIFL VKERVMCEGN 540 RREIRDYEVL YNRSAGEVRC ICSCFNFYGY LCRHALCVLN FNGVEEIPSK YILSRWKKDY 600 KRLYIPDHGS NRVDATDRVQ WFNQLHKSAL QVVEEGVISL DHYGVALQAF EESLNRVHEV 660 EEKQN*

Sequence ? help Back to Top

Protein Sequence Length: 666 aa Download sequence Send to blast

MAEAPRGIEQ VPDNELIEHQ KVKDGEISEL HGENGMPEER KEFVPPAVGM EFESYDDAYN  60
YYNCYAKEVG FRVRVKNSWF KRNSREKYGA VLCCSSQGFK RIKDVNRLRK ETRTGCPAMI  120
RMRLVDSKRW RVLEVTLEHN HLLGAKIYKS IKKMGTGNKR KSQPSSDAEV RTIKLYRALV  180
IDAGGTGNSS PNAREIRNEL PNQLNLKKGD AQAIYNYLCR MQLTNPNFFY LMDLNDEGHL  240
RNVFWIDARS RAACGYFNDV IYFDNTYLSS KYEIPLVAFV GINHHGHSVL LGCGLLAGET  300
TESYIWLFKT WLTCLSGCAP QTIITDRCKV LQGAIAEAFP RSHHCFGLSH IMRRVPEKLG  360
GLLNYDAIRK ALIKAVYETL KVIEFEAAWG FMVQRFGVVD HEWLRSLYED RVRWAPVYLK  420
DTFFAGMSAA LPGEALNPFF DRYVHKQTPL KEFLDKYELA LQKKHKEETN ADIESRSSGP  480
MLKTRCSFEL QLSKLYTREI FKKFQFEVEE MYSCFSTTQI HVDGPIIIFL VKERVMCEGN  540
RREIRDYEVL YNRSAGEVRC ICSCFNFYGY LCRHALCVLN FNGVEEIPSK YILSRWKKDY  600
KRLYIPDHGS NRVDATDRVQ WFNQLHKSAL QVVEEGVISL DHYGVALQAF EESLNRVHEV  660
EEKQN*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development. May have a role in controlling flowering time. {ECO:0000269\|PubMed:15591448}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.04G111100.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021611070.1	0.0	protein FAR1-RELATED SEQUENCE 6-like
Refseq	XP_021611071.1	0.0	protein FAR1-RELATED SEQUENCE 6-like
Refseq	XP_021611072.1	0.0	protein FAR1-RELATED SEQUENCE 6-like
Refseq	XP_021611073.1	0.0	protein FAR1-RELATED SEQUENCE 6-like
Refseq	XP_021611074.1	0.0	protein FAR1-RELATED SEQUENCE 6-like
Swissprot	Q9SSQ4	0.0	FRS6_ARATH; Protein FAR1-RELATED SEQUENCE 6
TrEMBL	A0A2C9W1N8	0.0	A0A2C9W1N8_MANES; Uncharacterized protein
STRING	VIT_09s0002g07400.t01	0.0	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF40	30	530

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G52520.1	0.0	FAR1-related sequence 6

Link Out ? help Back to Top
Phytozome	Manes.04G111100.1.p

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]