PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.04G104400.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family C2H2
Protein Properties Length: 287aa    MW: 31572.1 Da    PI: 7.1104
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.04G104400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.40.00023111133123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ++C++C + F ++  L  H++ H
  Manes.04G104400.1.p 111 FSCNYCQRKFYSSQALGGHQNAH 133
                          89*****************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.9E-6108138No hitNo description
PROSITE profilePS5015711.427111138IPR007087Zinc finger, C2H2
PROSITE patternPS000280113133IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MEPLSSEVCL SETSSSIVSV SNAPSKFSLN VSMDNPKGRK QLQEEEEEEE EERENKNEDT  60
SDRDLVLDLS LLSGKDSKPE LINLIDSFDM ESSQKSSLDT PQGNEIEPRV FSCNYCQRKF  120
YSSQALGGHQ NAHKRERTLA KRGQRINGGG SFSLGHHHNS QINRYTSMAS LPLHGLLNRS  180
LGIQVHSMIH KPSFVPSSTL SSSNVHGKNG WSRQPIGQQP AVGRLPSESF HMGTRIGSSN  240
GVARFESAGK FSPAGERMGG YWCDSGVNHL KTKQDDLQKL DLSLKL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.04G104400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021610040.10.0zinc finger protein 1
TrEMBLA0A2C9W3U10.0A0A2C9W3U1_MANES; Uncharacterized protein
STRINGcassava4.1_013271m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14393172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80730.13e-41zinc-finger protein 1