PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.04G102600.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | WRKY | ||||||||
Protein Properties | Length: 326aa MW: 35953.2 Da PI: 9.0875 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 93.3 | 1.7e-29 | 174 | 233 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dgy+WrKYGqK+ ++++ pr+Y++C++a +Cpvkkkv+rs ed++v++ tYegeHnh+ Manes.04G102600.1.p 174 VKDGYQWRKYGQKVTRDNPSPRAYFKCSFApTCPVKKKVQRSIEDQSVLVATYEGEHNHP 233 58***************************99****************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.0E-28 | 163 | 235 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 26.532 | 169 | 235 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 4.58E-25 | 172 | 235 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.3E-33 | 174 | 234 | IPR003657 | WRKY domain |
Pfam | PF03106 | 3.9E-24 | 175 | 233 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009617 | Biological Process | response to bacterium | ||||
GO:0009620 | Biological Process | response to fungus | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 326 aa Download sequence Send to blast |
MDTSSTSAAM DYSYSLVDTS LDLNINPRRS NDVAPVRERL GLSKEVQSNF MELGRKVSVK 60 QENGALVEEL NRVSAENKKL TEMLNVLCEN YNVLRSQLMD YMSKNPDKEL SPSRKRKSES 120 SNNNINDNTV AMNRNSESSS TDEESCKKPK EEVIKSKVSK VYVRTQASDA SLVVKDGYQW 180 RKYGQKVTRD NPSPRAYFKC SFAPTCPVKK KVQRSIEDQS VLVATYEGEH NHPHPSQMEA 240 TSAATRSLNL GSVPCSASLG SSGPTVTLDL TKSKTNNNDA RISNSRMESS SDVRQLLVEQ 300 MASSLTKDPN FTAALAAAIS GRMLQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 6e-20 | 159 | 235 | 1 | 74 | WRKY transcription factor 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 112 | 117 | SRKRKS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor (By similarity). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250|UniProtKB:Q9SUP6}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.04G102600.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KT827585 | 0.0 | KT827585.1 Manihot esculenta WRKY transcription factor 10 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021609717.1 | 0.0 | probable WRKY transcription factor 40 | ||||
Swissprot | Q9SAH7 | 1e-102 | WRK40_ARATH; Probable WRKY transcription factor 40 | ||||
TrEMBL | A0A2C9W1B1 | 0.0 | A0A2C9W1B1_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_012109m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF973 | 34 | 115 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G80840.1 | 3e-88 | WRKY DNA-binding protein 40 |
Link Out ? help Back to Top | |
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Phytozome | Manes.04G102600.1.p |