PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.04G027000.2.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family AP2
Protein Properties Length: 489aa    MW: 53585.5 Da    PI: 8.0063
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.04G027000.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.56.2e-17167216155
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                          s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  Manes.04G027000.2.p 167 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 216
                          78*******************......55************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.11E-15167225IPR016177DNA-binding domain
PfamPF008475.6E-9167216IPR001471AP2/ERF domain
SMARTSM003806.4E-32168230IPR001471AP2/ERF domain
PROSITE profilePS5103217.899168224IPR001471AP2/ERF domain
CDDcd000183.28E-11168223No hitNo description
Gene3DG3DSA:3.30.730.105.0E-17168224IPR001471AP2/ERF domain
SuperFamilySSF541712.22E-6259303IPR016177DNA-binding domain
CDDcd000183.50E-13259304No hitNo description
SMARTSM003801.1E-12260308IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 489 aa     Download sequence    Send to blast
MLDLNLTEES SESIQNSNSV VLMDKYQYQY SEGSGTSNSS IINADASSND DSCSTRACTG  60
DATNSSNNNT SSLFTFNFGI LKVGGGAVTE NENVALETKE FFPVGNRKEV GGDYGNSIGQ  120
GTSRNWIDLS FERKQDIGNG EVREVRVVQP PAQHVKKSRR GPRSRSSQYR GVTFYRRTGR  180
WESHIWDCGK QVYLGGFDTA HAAARAYDRA AIKFRGVDAD INFSLKDYEE DLKQVKNLTK  240
EEFVHILRRQ STGFSRGSSK YRGVTLHKCG RWEARMGQFL GKKAYDKAAI KCNGREAVTN  300
FEPSAYEGEM ISEASNEGTG HNLDLNLGIS RSLGDGPKEN ESCLQFHLGP YAMDTKSARE  360
NSTALMVGDL PSKGPLISDR PVFWNSVYPS FFPNEERAPD KRIELGSSQG LPNWVWQTHG  420
QVTATPITLF STAASSGFSF SATPPSAAIR PPKPPNPAAH NLCFTPPASM ATSATHFYCL  480
VKPPQTPP*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Regulates negatively the transition to flowering time and confers flowering time delay. {ECO:0000250, ECO:0000269|PubMed:14555699}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00615PBMTransfer from AT2G28550Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.04G027000.2.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by miR172a-2/EAT. {ECO:0000269|PubMed:14555699}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021610913.10.0ethylene-responsive transcription factor RAP2-7-like isoform X3
SwissprotQ9SK031e-127RAP27_ARATH; Ethylene-responsive transcription factor RAP2-7
TrEMBLA0A2C9VYW70.0A0A2C9VYW7_MANES; Uncharacterized protein
STRINGcassava4.1_006005m0.0(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.11e-110related to AP2.7