PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.04G027000.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family AP2
Protein Properties Length: 505aa    MW: 55441.5 Da    PI: 7.519
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.04G027000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.46.4e-17167216155
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                          s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  Manes.04G027000.1.p 167 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 216
                          78*******************......55************************997 PP
2AP241.14.4e-13259309155
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          s+y+GV+ +k  grW+A+   +     +k+++lg f+++ eAa+a+++a+ k +g
  Manes.04G027000.1.p 259 SKYRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDSEVEAARAYDKAAIKCNG 309
                          89********.7******5553..2.26**********99**********99776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.11E-15167225IPR016177DNA-binding domain
PfamPF008475.9E-9167216IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.2E-17168224IPR001471AP2/ERF domain
PROSITE profilePS5103217.899168224IPR001471AP2/ERF domain
SMARTSM003806.4E-32168230IPR001471AP2/ERF domain
CDDcd000183.56E-11168223No hitNo description
CDDcd000181.11E-25259319No hitNo description
PfamPF008471.3E-8259309IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-17259318IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.0E-15260317IPR001471AP2/ERF domain
PROSITE profilePS5103215.527260317IPR001471AP2/ERF domain
SMARTSM003804.9E-32260323IPR001471AP2/ERF domain
PRINTSPR003675.6E-6261272IPR001471AP2/ERF domain
PRINTSPR003675.6E-6299319IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 505 aa     Download sequence    Send to blast
MLDLNLTEES SESIQNSNSV VLMDKYQYQY SEGSGTSNSS IINADASSND DSCSTRACTG  60
DATNSSNNNT SSLFTFNFGI LKVGGGAVTE NENVALETKE FFPVGNRKEV GGDYGNSIGQ  120
GTSRNWIDLS FERKQDIGNG EVREVRVVQP PAQHVKKSRR GPRSRSSQYR GVTFYRRTGR  180
WESHIWDCGK QVYLGGFDTA HAAARAYDRA AIKFRGVDAD INFSLKDYEE DLKQVKNLTK  240
EEFVHILRRQ STGFSRGSSK YRGVTLHKCG RWEARMGQFL GKKYIYLGLF DSEVEAARAY  300
DKAAIKCNGR EAVTNFEPSA YEGEMISEAS NEGTGHNLDL NLGISRSLGD GPKENESCLQ  360
FHLGPYAMDT KSARENSTAL MVGDLPSKGP LISDRPVFWN SVYPSFFPNE QERAPDKRIE  420
LGSSQGLPNW VWQTHGQVTA TPITLFSTAA SSGFSFSATP PSAAIRPPKP PNPAAHNLCF  480
TPPASMATSA THFYCLVKPP QTPP*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Regulates negatively the transition to flowering time and confers flowering time delay. {ECO:0000250, ECO:0000269|PubMed:14555699}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00615PBMTransfer from AT2G28550Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.04G027000.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by miR172a-2/EAT. {ECO:0000269|PubMed:14555699}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021610910.10.0ethylene-responsive transcription factor RAP2-7-like isoform X1
RefseqXP_021610911.10.0ethylene-responsive transcription factor RAP2-7-like isoform X1
SwissprotQ9SK031e-122RAP27_ARATH; Ethylene-responsive transcription factor RAP2-7
TrEMBLA0A2C9W1870.0A0A2C9W187_MANES; Uncharacterized protein
STRINGcassava4.1_006005m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28073476
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.31e-121related to AP2.7