PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.04G026400.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family Dof
Protein Properties Length: 277aa    MW: 30595 Da    PI: 7.0595
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.04G026400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof128.42e-403293263
               zf-Dof  2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63
                         +e+alkcprCds ntkfCyynnyslsqPryfCk+CrryWtkGG+lrnvPvGgg+rknk+sss
  Manes.04G026400.1.p 32 PEQALKCPRCDSINTKFCYYNNYSLSQPRYFCKSCRRYWTKGGTLRNVPVGGGCRKNKRSSS 93
                         7899******************************************************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074782.0E-312090IPR003851Zinc finger, Dof-type
PfamPF027012.9E-343490IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.4693690IPR003851Zinc finger, Dof-type
PROSITE patternPS0136103874IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MDPSSGQNQE MPLENIIVCS KPHQDKKPRP QPEQALKCPR CDSINTKFCY YNNYSLSQPR  60
YFCKSCRRYW TKGGTLRNVP VGGGCRKNKR SSSSSSSKKF QDHHQTNPLT SLPSYDSNDL  120
SLAFARLQKQ SNGQLGFDDD HDLSILGNPS IHNTTSASTS PFFDALRNGI LDSQSNNLQN  180
LYYGYGNGNM GEVASGEMMM MMPYEDMSGA ATQAVTVTTM KQEFCNGREE DDNKVLWGFP  240
WQLNGNGIGG GDLDSGREAW NGLGSTWHGL VNSPLM*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.04G026400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3515478e-62AF351547.1 Gossypium hirsutum clone JESPR310 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021609876.10.0dof zinc finger protein DOF2.1-like
SwissprotQ8LE431e-51DOF21_ARATH; Dof zinc finger protein DOF2.1
TrEMBLA0A2C9W0C20.0A0A2C9W0C2_MANES; Uncharacterized protein
STRINGcassava4.1_026276m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF50263051
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28510.11e-42Dof family protein