PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.04G012700.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family C2H2
Protein Properties Length: 398aa    MW: 44250.9 Da    PI: 8.3316
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.04G012700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2232.1e-07227249123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          + C+ Cgk F+r  nL+ H+r H
  Manes.04G012700.1.p 227 HYCEVCGKGFKRDANLRMHMRAH 249
                          68*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.99E-6225253No hitNo description
SMARTSM003550.0024227249IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.608.8E-7227253IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015712.757227254IPR007087Zinc finger, C2H2
PfamPF128745.6E-4228247No hitNo description
PROSITE patternPS000280229249IPR007087Zinc finger, C2H2
SMARTSM0035577287320IPR015880Zinc finger, C2H2-like
SMARTSM0035522325347IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 398 aa     Download sequence    Send to blast
MISEGGSCFL NASQAGLQMY PGSEDVVSTS IEASSSSEHH SNSLLYSLSI LKDKVHQVQS  60
LVSIFISPND HHHHNLTQQP ESTSLAIARV GTIIQEIIVT ASSMVFTCQQ MAIGSAPTNN  120
GTTDELHQEA QVHKVEENGL LQTNFDGNNV AQERGQSSFL SSETLEFWCS DNYNSRGMLA  180
LESNQKVERK VFSQEKSEKS AQGKSLLVKN YDIIQLDAAD LLAKYTHYCE VCGKGFKRDA  240
NLRMHMRAHG DEYKTIAALS NPMKNTSSSA IMGDNNESWS TKLPRKYSCP QEGCRWNQKH  300
AKFQPLKSMI CVKNHYKRSH CPKMYVCKRC NRKQFSVLSD LRTHEKHCGE LKWQCSCGTT  360
FSRKDKLMGH VALFVGHTPA IASSPKPSPG VENRQAN*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Together with STOP1, plays a critical role in tolerance to major stress factors in acid soils such as proton H(+) and aluminum ion Al(3+). Required for the expression of genes in response to acidic stress (e.g. ALMT1 and MATE), and Al-activated citrate exudation. {ECO:0000269|PubMed:23935008}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00522DAPTransfer from AT5G22890Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.04G012700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021611146.10.0protein SENSITIVE TO PROTON RHIZOTOXICITY 2
SwissprotQ0WT241e-116STOP2_ARATH; Protein SENSITIVE TO PROTON RHIZOTOXICITY 2
TrEMBLA0A2C9VZY30.0A0A2C9VZY3_MANES; Uncharacterized protein
STRINGcassava4.1_023505m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80993045
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22890.11e-113C2H2 family protein