PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.04G004800.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | C2H2 | ||||||||
Protein Properties | Length: 320aa MW: 36492.5 Da PI: 8.4915 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 16.2 | 2.9e-05 | 241 | 263 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C +CgksF k + ++H +++ Manes.04G004800.1.p 241 FMCRKCGKSFAVKGDWRTHEKNC 263 89*****************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.28E-6 | 227 | 261 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 3.5E-6 | 237 | 261 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 8.787 | 241 | 261 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 320 aa Download sequence Send to blast |
MDLLNYHQDE ANNLCFLSPT NFIEWLKPSS SSSSSSSVTQ QIQLTNPITM LKLPLLYPQP 60 QRQESVKETI QCLPLLSRLT EENKGLKETS TVGVKEEKIT VSLHIGLPNI SEDSQVETKV 120 FDFNKEEQQP IKKIFHGNCS FNKENRFWIP TPTQILGSSS RDCILCEDNF SSYMHMWGHG 180 SEFRRGPDSL KGTQPAAMLR LPCYCCATGC KNNINHPRAK PLKDFRTLQT HYKRKHGAKP 240 FMCRKCGKSF AVKGDWRTHE KNCGKLWYCR CGSDFKHKRS LKDHIRSFGK GHSPHPSLEG 300 FQDDKECITT GSEEDEHLH* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional regulator. {ECO:0000305|PubMed:20541552}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.04G004800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021610526.1 | 0.0 | zinc finger protein WIP3-like | ||||
Swissprot | Q9SGD1 | 1e-112 | ZWIP3_ARATH; Zinc finger protein WIP3 | ||||
TrEMBL | A0A2C9VZQ9 | 0.0 | A0A2C9VZQ9_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_025979m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF170 | 34 | 289 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G08290.1 | 1e-111 | WIP domain protein 3 |
Link Out ? help Back to Top | |
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Phytozome | Manes.04G004800.1.p |
Publications ? help Back to Top | |||
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