PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.03G208500.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family MYB
Protein Properties Length: 333aa    MW: 37429.4 Da    PI: 7.4034
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.03G208500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.23.7e-184087148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         rg+WT+eEd  l+++++ +G g+W++ ar  g++Rt+k+c++rw++yl
  Manes.03G208500.1.p 40 RGPWTAEEDFNLINYIATHGEGRWNSLARSAGLKRTGKSCRLRWLNYL 87
                         89********************************************97 PP
2Myb_DNA-binding49.41e-1593136146
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          rg+ T eE++ +++++ ++G++ W++Ia++++ gRt++++k++w++
  Manes.03G208500.1.p  93 RGNITLEEQLMILELHSRWGNR-WSKIAQHLP-GRTDNEIKNYWRT 136
                          7999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129423.3063591IPR017930Myb domain
SuperFamilySSF466891.04E-3037134IPR009057Homeodomain-like
SMARTSM007173.1E-153989IPR001005SANT/Myb domain
PfamPF002491.3E-164087IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-224194IPR009057Homeodomain-like
CDDcd001671.43E-114287No hitNo description
SMARTSM007172.6E-1492140IPR001005SANT/Myb domain
PROSITE profilePS5129418.16892142IPR017930Myb domain
PfamPF002492.1E-1493136IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.7E-2395141IPR009057Homeodomain-like
CDDcd001671.14E-1097136No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MMTMMDVKGI NSNRKSSSSS SSSSSTTQSE EEMGAHDLRR GPWTAEEDFN LINYIATHGE  60
GRWNSLARSA GLKRTGKSCR LRWLNYLRPD VRRGNITLEE QLMILELHSR WGNRWSKIAQ  120
HLPGRTDNEI KNYWRTRVQK HAKQLKCDVN SKQFKDTMRY LWMPRLIERI QAANTNATST  180
STSTATTTAA ATTGVANITT DPTYHHHLIN NTDMGNRQWA AVVHGGAAGL VGNEFGAAHV  240
TPTTYTTPET SSTGASSDSF GTRVSPNDYY NMNPDYFQSV QVGYSDSMIS PSGYFNQVMD  300
FQTMEQNNHQ LWVDGGDTSE NLWNVDDIWF NM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-253713424120MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.03G208500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021606521.10.0transcription factor MYB108-like
TrEMBLA0A2C9WAX90.0A0A2C9WAX9_MANES; Uncharacterized protein
STRINGcassava4.1_026695m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF87534125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G48000.13e-84myb domain protein 112