PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.03G204000.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family GRAS
Protein Properties Length: 579aa    MW: 64751.5 Da    PI: 4.7276
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.03G204000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS283.94.7e-872075762374
                 GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykal.ppsetseknsseelaalkl....fse 86 
                           elLl+ Ae vs++++ +a++lL++  +l+s++g++++R+++yf +AL +r+ r++ ++ ++    ++    n +e+++a +      ++
  Manes.03G204000.1.p 207 AELLLASAEKVSNQQFDRARTLLNQCDHLSSSTGNAVERVVHYFSKALGERIDRETGKMTSQGlGKQQLF--NIDEAIMAPTPnilaSYQ 294
                          689***************************************************5555554441443333..466666665434556667 PP

                 GRAS  87 vsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesgskeeleetgerLakfAeelgvp 175
                            P+ +++h++  qa+le v++++r+H+iD++i  G+QW  L+qaL s++  +   l+iT++g    + k+ +e tg+rL++fA+++g+p
  Manes.03G204000.1.p 295 EVPFSQVAHFAGTQAVLENVAEAKRIHVIDLGIRIGVQWTGLMQALVSQSdFSLELLKITAIGT---TLKQVIEDTGKRLTSFADSIGLP 381
                          78**********************************************99556779********...579******************** PP

                 GRAS 176 fefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyys 265
                          f+f++++++++ +l+ + ++++ +E+++V + + l +l     +l+++ d+++k++++l+P+++vv+e   +++s+ F++rf+e+l y+s
  Manes.03G204000.1.p 382 FSFKIVMVSDILELKEDLFELDADETVVVYCEYLLRSLI----PLPDRLDSMMKVIRTLNPTIMVVTEPQFNCTSPYFVNRFIESLFYFS 467
                          *********************************888887....99999999*************************************** PP

                 GRAS 266 alfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveee 354
                          a fd+le+ +  ++ +r+ vE   +g+ i+n+v++eg+er+ ++ tle Wr+ + ++G+++ ++s++    a+l+ rk++ ++  +++ +
  Manes.03G204000.1.p 468 AYFDCLESCM-GDDPNRMIVESLHFGEGIRNIVTTEGEERKIQNATLEVWRAFFARFGMEETEMSTSSLYLAELIARKFAcGRACTLDLD 556
                          *******997.78899*****************************************************************9******** PP

                 GRAS 355 sgslvlgWkdrpLvsvSaWr 374
                           +sl++gWk+ ++ s+SaW+
  Manes.03G204000.1.p 557 GKSLLIGWKGTAMHSLSAWK 576
                          *******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098541.967180555IPR005202Transcription factor GRAS
PfamPF035141.6E-84207576IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 579 aa     Download sequence    Send to blast
MKTSENFNLH EVQDELSTTN KSSESMVERN QGLEDWGESA GVDFHGSDYG YMKDNAPKGH  60
LSFFPHQQKS FLHSDIFYGI GYDALSPPLR TSLEDTSKLG DFQNDIQGQP NKTKQDQFAS  120
TSLELLNSYV KALKRLSSER IIKPTNDTPS IEVASKGFST EGIMRVAAER FIQSFTKTVD  180
VVSMLDNPFD ISFSGLPDEE AKKVELAELL LASAEKVSNQ QFDRARTLLN QCDHLSSSTG  240
NAVERVVHYF SKALGERIDR ETGKMTSQGL GKQQLFNIDE AIMAPTPNIL ASYQEVPFSQ  300
VAHFAGTQAV LENVAEAKRI HVIDLGIRIG VQWTGLMQAL VSQSDFSLEL LKITAIGTTL  360
KQVIEDTGKR LTSFADSIGL PFSFKIVMVS DILELKEDLF ELDADETVVV YCEYLLRSLI  420
PLPDRLDSMM KVIRTLNPTI MVVTEPQFNC TSPYFVNRFI ESLFYFSAYF DCLESCMGDD  480
PNRMIVESLH FGEGIRNIVT TEGEERKIQN ATLEVWRAFF ARFGMEETEM STSSLYLAEL  540
IARKFACGRA CTLDLDGKSL LIGWKGTAMH SLSAWKFT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-3421457527378Protein SCARECROW
5b3h_A1e-3421457526377Protein SCARECROW
5b3h_D1e-3421457526377Protein SCARECROW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.03G204000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021605802.10.0DELLA protein RGL1-like
TrEMBLA0A2C9WAX60.0A0A2C9WAX6_MANES; Uncharacterized protein
STRINGcassava4.1_030912m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47933162
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.11e-48RGA-like 1