PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.03G203900.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family GRAS
Protein Properties Length: 584aa    MW: 65424.5 Da    PI: 4.6151
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.03G203900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS275.12.2e-842125812374
                 GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykal.ppsetseknsseelaalkl....fse 86 
                           elLl++A  vs+++  +a++lL++   l+s +g++++R+++yf +AL++r+ +++ ++ ++  + ++    n +e+++a +      ++
  Manes.03G203900.1.p 212 AELLLAAAVKVSNQQYDRARTLLNQCDCLSSTTGNAVERVVHYFSKALEERIDQETGKITSQGlEKQQFF--NIDEAIMASTPnilaCYQ 299
                          689***************************************************6666665541555554..566666665435566788 PP

                 GRAS  87 vsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesgskeeleetgerLakfAeelgvp 175
                            P+ +++h++  qaI+e v +++r+H+iD++i+ G+QW  L+qaL s++  +   l+iT++g    + k+ ++ tg+rL++fAe++g+p
  Manes.03G203900.1.p 300 EVPFSQVAHFAGIQAIVENVTEAKRIHVIDLGIKIGVQWTGLMQALVSQSdFSLELLKITAIGT---TLKRLIKDTGKRLTSFAESVGLP 386
                          88**********************************************99556779********...579999***************** PP

                 GRAS 176 fefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyys 265
                          f+fn+++++++ +l+ + ++++ +E+++V + + l ++     +l+++ d+++k++++l+P+++vv+e e + +s+ F++ f+e+l y+s
  Manes.03G203900.1.p 387 FSFNTVMVSDILELKEDLFELDADETVVVYCEYLLWSFI----PLPDRLDSMMKVIRNLNPTIMVVTEPEFNSTSPYFVNSFIESLFYFS 472
                          *********************************999998....89999999*************************************** PP

                 GRAS 266 alfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveee 354
                          a fd+le  + r++ +r+ +E   +g++i+n+v++eg+er+ ++ tl  Wr  + ++G+++ +ls++    a+l+ +k++ +   ++  +
  Manes.03G203900.1.p 473 AYFDCLECCM-RDNPKRMIIESLRFGEAIRNIVTTEGEERKIQNATLDVWRVFFARFGMEETELSTSSLRLAELIAKKFPcGSACTLGMD 561
                          *******996.9********************************************************************9999****** PP

                 GRAS 355 sgslvlgWkdrpLvsvSaWr 374
                           +sl++gWk+ ++ s+SaW+
  Manes.03G203900.1.p 562 GKSLLIGWKGTAMHSLSAWK 581
                          *******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098540.31185560IPR005202Transcription factor GRAS
PfamPF035147.4E-82212581IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 584 aa     Download sequence    Send to blast
MKTSEIFSFH EVPDELSSTN KSSERMEEGI QGQLSGGEDW GESASFDSHH SDFGSLKDNS  60
SKENLIFFSH HQEWFLDSDI FCGLEDNIFS PPVKKSLGGI SRLGEIQNDI QDQPKKTTQD  120
QFTLTSLGLL KSYGKGLKRL SSERIIKPTN DTPSIEVASQ ELSTEGIMRV AAERFIQPFT  180
KTVDVVVSML DNPFDISFSG LPDEEAKKLE LAELLLAAAV KVSNQQYDRA RTLLNQCDCL  240
SSTTGNAVER VVHYFSKALE ERIDQETGKI TSQGLEKQQF FNIDEAIMAS TPNILACYQE  300
VPFSQVAHFA GIQAIVENVT EAKRIHVIDL GIKIGVQWTG LMQALVSQSD FSLELLKITA  360
IGTTLKRLIK DTGKRLTSFA ESVGLPFSFN TVMVSDILEL KEDLFELDAD ETVVVYCEYL  420
LWSFIPLPDR LDSMMKVIRN LNPTIMVVTE PEFNSTSPYF VNSFIESLFY FSAYFDCLEC  480
CMRDNPKRMI IESLRFGEAI RNIVTTEGEE RKIQNATLDV WRVFFARFGM EETELSTSSL  540
RLAELIAKKF PCGSACTLGM DGKSLLIGWK GTAMHSLSAW KFI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A4e-3424158133375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.03G203900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021605802.10.0DELLA protein RGL1-like
TrEMBLA0A2C9WAT30.0A0A2C9WAT3_MANES; Uncharacterized protein
STRINGcassava4.1_032551m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47933162
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.13e-45RGA-like 1