PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.03G203800.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family GRAS
Protein Properties Length: 583aa    MW: 65145 Da    PI: 4.5511
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.03G203800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS264.63.3e-812115802374
                 GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvsel.ykalppsetseknsseelaalkl....fse 86 
                           elLl+ Ae vs+++  +a++lL++   l+s++g++++R+++yf +AL +r+ +++ ++ ++ l+ ++    n +e+++a +      ++
  Manes.03G203800.1.p 211 AELLLASAEKVSNQQYDCARTLLNQCDCLSSNTGNAVERVVHYFCKALGRRIDQETGKIaFQGLEKQQFF--NIDEAIMAPTSnilaCYQ 298
                          689**************************************************95555415555555554..566666666555567788 PP

                 GRAS  87 vsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesgskeeleetgerLakfAeelgvp 175
                            P+ ++sh++  qa++e v +++r+H+iD++i  G+QW  L+q L s++  +   l+iT+vg    + k+ +e tgerL++fAe++g++
  Manes.03G203800.1.p 299 EVPFSQVSHFAGIQAVVENVTEAKRIHVIDLGIRTGVQWTGLMQVLVSQSdFSLELLKITAVGT---TLKRLIEDTGERLTSFAESIGLH 385
                          88**********************************************99556779********...579999***************** PP

                 GRAS 176 fefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyys 265
                          f+fn+++++++ +l+ + ++++ +E+++V + + l +l     +++++ d+++k++++l+P+++vv+e e + +s+ Fl+rf+++l y+s
  Manes.03G203800.1.p 386 FSFNTVMVSDILELKEDLFELDADETVVVYCEYLLRSLI----PSPDRLDSMMKVIRNLNPTIMVVTEPEFNSTSPYFLNRFIKSLFYFS 471
                          *********************************999988....66666777*************************************** PP

                 GRAS 266 alfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveee 354
                          a fd+le  + r++ +r+++E   ++++i++ v++eg+e + ++ tle Wr+ + ++G+++ +ls++    a+l+ ++++ +   ++  +
  Manes.03G203800.1.p 472 AYFDCLECCM-RDNPNRMTIESLHFAEAIRKTVTTEGEEMKIQNATLEVWRAFFARFGMEETELSTSSLYLAELVAKNFAcGSACTLGMD 560
                          *******996.9********************************************************************9999****** PP

                 GRAS 355 sgslvlgWkdrpLvsvSaWr 374
                           +sl++gWk+ ++ s+SaW+
  Manes.03G203800.1.p 561 GKSLLIGWKGTAMHSLSAWK 580
                          *******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098538.397184559IPR005202Transcription factor GRAS
PfamPF035141.1E-78211580IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 583 aa     Download sequence    Send to blast
MKTSENFNFH EVPDELSTTN KSSESIEEGN QGQLFGGEDW GESAGTDSNC ADYVSLKANS  60
SKEHLIFFSR HQESFLDSDI LCGLEDDIFS PPLQKSLGDI SRLGEIQNDA QDQPKKTKHD  120
QFTLTSLGLL KSYVKGLKRL SSERIVKPTN DTPIIEVASQ GFSTEGIMRI AAERFIQSFI  180
KTVDVVSMLD SPFDISFSGL PDDEAKKLEL AELLLASAEK VSNQQYDCAR TLLNQCDCLS  240
SNTGNAVERV VHYFCKALGR RIDQETGKIA FQGLEKQQFF NIDEAIMAPT SNILACYQEV  300
PFSQVSHFAG IQAVVENVTE AKRIHVIDLG IRTGVQWTGL MQVLVSQSDF SLELLKITAV  360
GTTLKRLIED TGERLTSFAE SIGLHFSFNT VMVSDILELK EDLFELDADE TVVVYCEYLL  420
RSLIPSPDRL DSMMKVIRNL NPTIMVVTEP EFNSTSPYFL NRFIKSLFYF SAYFDCLECC  480
MRDNPNRMTI ESLHFAEAIR KTVTTEGEEM KIQNATLEVW RAFFARFGME ETELSTSSLY  540
LAELVAKNFA CGSACTLGMD GKSLLIGWKG TAMHSLSAWK FI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A9e-3524058033375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.03G203800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021605802.10.0DELLA protein RGL1-like
TrEMBLA0A2C9WBS60.0A0A2C9WBS6_MANES; Uncharacterized protein
STRINGcassava4.1_028139m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47933162
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.16e-44RGA-like 1