PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Manes.03G203700.1.p

Organism

Manihot esculenta

Taxonomic ID

3983

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

GRAS

Protein Properties

Length: 553aa MW: 61863.4 Da PI: 5.811

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.03G203700.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	200.3	1.2e-61	195	547	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPi 90 lvelLl+ e + +++ +a+ lL + l+s++g+++qR+++yf +AL++r++r ++ + ++++ + ++l ++++ +Pi Manes.03G203700.1.p 195 LVELLLASTENIVNQQYDQASILLDKCDALSSSTGNAVQRVVHYFSKALRKRINR------DTGRITTQD-LEKLQSLRIHEINMAPTPI 277 678999999********************************************......444444443.2345555666666666777 PP GRAS 91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefn 179 + +h ++ v++ + v i G+QW L+qaLas++e p l+iT++g ++k+ +e tg+rL+ fA+++ +pf f+ Manes.03G203700.1.p 278 VLACHR---EMPFSQVANFTGVQ-----IIIGVQWTGLMQALASQSEHPLeLLKITAIGT---TKKHLIEDTGKRLEGFAQTISLPFCFK 356 666664...44456666666664.....558**********96655499***...579999***************** PP GRAS 180 vlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfd 269 +++++++ dl+ + ++++ +E+++V + ++l sl+++ d+v++++++l+P+++ vve e++++ +sF++r +eal ++ a fd Manes.03G203700.1.p 357 LIMVSDMLDLREDLFELDDDETVVVYSGFSLRGPI----SLPDRLDSVMQVIRNLNPHLLLVVEPELSLSLTSFVNRTVEALGFFGAYFD 442 *************************887776....99999999*************************************** PP GRAS 270 sleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgsl 358 +le + +++ +ri E ll++ i+ ++ +eg+e + r+ +l Wr+ + ++G+++ ++s++ +qa+l+ +k++ ++ ++ + gsl Manes.03G203700.1.p 443 CLEDCM-SDDPTRIIKESSLLSEGISIAIDHEGKEWKSRCAKLDAWRAFFARFGMEETKMSSSSLCQANLVAKKFAgGNSCTLAVDGGSL 531 9996.889****************************************************************9999****** PP GRAS 359 vlgWkdrpLvsvSaWr 374 ++gWk++p++s+SaW+ Manes.03G203700.1.p 532 LIGWKGKPMYSLSAWK 547 *************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	26.963	169	526	IPR005202	Transcription factor GRAS
Pfam	PF03514	4.0E-59	195	547	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 553 aa Download sequence Send to blast
METSEEFDFG EVHDRLSSTD QSSEILEVEN GKKQVPGYID EDWGESTAID SHHPDKRSSK 60 DDPSKEGSVF THHHQQQELK QQSVLKPRQS FPKEITEQTK KEKQDSFPPA SLEILKCYGK 120 GLKRLRNQKI MEATNGKTTL KVASPRLSTE EIIRTAGKRA FQSFNNMVDV SSMQDNPFDV 180 SFSCLSNEDA KKVELVELLL ASTENIVNQQ YDQASILLDK CDALSSSTGN AVQRVVHYFS 240 KALRKRINRD TGRITTQDLE KLQSLRIHEI NMAPTPIVLA CHREMPFSQV ANFTGVQIII 300 GVQWTGLMQA LASQSEHPLE LLKITAIGTT KKHLIEDTGK RLEGFAQTIS LPFCFKLIMV 360 SDMLDLREDL FELDDDETVV VYSGFSLRGP ISLPDRLDSV MQVIRNLNPH LLLVVEPELS 420 LSLTSFVNRT VEALGFFGAY FDCLEDCMSD DPTRIIKESS LLSEGISIAI DHEGKEWKSR 480 CAKLDAWRAF FARFGMEETK MSSSSLCQAN LVAKKFAGGN SCTLAVDGGS LLIGWKGKPM 540 YSLSAWKFVS QK*

Sequence ? help Back to Top

Protein Sequence Length: 553 aa Download sequence Send to blast

METSEEFDFG EVHDRLSSTD QSSEILEVEN GKKQVPGYID EDWGESTAID SHHPDKRSSK  60
DDPSKEGSVF THHHQQQELK QQSVLKPRQS FPKEITEQTK KEKQDSFPPA SLEILKCYGK  120
GLKRLRNQKI MEATNGKTTL KVASPRLSTE EIIRTAGKRA FQSFNNMVDV SSMQDNPFDV  180
SFSCLSNEDA KKVELVELLL ASTENIVNQQ YDQASILLDK CDALSSSTGN AVQRVVHYFS  240
KALRKRINRD TGRITTQDLE KLQSLRIHEI NMAPTPIVLA CHREMPFSQV ANFTGVQIII  300
GVQWTGLMQA LASQSEHPLE LLKITAIGTT KKHLIEDTGK RLEGFAQTIS LPFCFKLIMV  360
SDMLDLREDL FELDDDETVV VYSGFSLRGP ISLPDRLDSV MQVIRNLNPH LLLVVEPELS  420
LSLTSFVNRT VEALGFFGAY FDCLEDCMSD DPTRIIKESS LLSEGISIAI DHEGKEWKSR  480
CAKLDAWRAF FARFGMEETK MSSSSLCQAN LVAKKFAGGN SCTLAVDGGS LLIGWKGKPM  540
YSLSAWKFVS QK*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	2e-22	203	546	27	378	Protein SCARECROW
5b3h_A	2e-22	203	546	26	377	Protein SCARECROW
5b3h_D	2e-22	203	546	26	377	Protein SCARECROW
5hyz_A	2e-22	214	547	22	375	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.03G203700.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012084258.1	0.0	DELLA protein RGL1
TrEMBL	A0A2C9W962	0.0	A0A2C9W962_MANES; Uncharacterized protein
STRING	cassava4.1_025745m	0.0	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF479	33	162

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66350.1	1e-28	RGA-like 1

Link Out ? help Back to Top
Phytozome	Manes.03G203700.1.p