PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.03G203200.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family GRAS
Protein Properties Length: 433aa    MW: 48898.7 Da    PI: 7.774
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.03G203200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS242.61.7e-74584274374
                 GRAS   4 lLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn....sseelaalklfsevs. 88 
                          lLl+ A+ vs++++ +a+++L+    l+s +g+++qR+++yft+AL++r++r   +++  l+ se++e+     s++++ ++ ++  +s 
  Manes.03G203200.1.p  58 LLLASAHKVSNQQFDAASKFLNLCAFLSSRTGSSVQRVIHYFTKALQERISR-RIGIV-PLNGSESKERMllhpSQTTVRFDPALISCSl 145
                          7999************************************************.33333.3455555444456665555566666666655 PP

                 GRAS  89 ..PilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvp 175
                            P+++++ ++  qa+ + + ++++vH i ++i+ G+    L+qaLa+R++ p   l+iT+vg   +  +++ e tg+rLa fAe+l++p
  Manes.03G203200.1.p 146 klPCVQLTKFAGVQAVIDNLPSARKVHLINLSIGTGGNCTVLMQALANRQDCPVeLLKITAVGV--TALRQNFEDTGKRLACFAETLKLP 233
                          55************************************************6555499*******..45999******************* PP

                 GRAS 176 fefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyys 265
                          f f++++  +++dl+ ++++++++E +a+     + ++ +++++l+s    +++++++l+P v+v++e ea+h+s+ F ++f+eal++ys
  Manes.03G203200.1.p 234 FFFQTVTFVNIKDLKEDMFELSNDEEIAIFAPCIVRNIKAQPGCLSS----LVRVLRNLNPCVLVMIELEANHSSTIFIDQFVEALQFYS 319
                          ******9****************************************....*************************************** PP

                 GRAS 266 alfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveee 354
                          ++fd+++  +  +se ri  E++ lg+ei+n+va + +e++  h +  +Wr+ +++ G+ ++++s +  +qa+l+l++++ ++   +  +
  Manes.03G203200.1.p 320 SCFDCIQDCI-DQSESRIAAEAF-LGQEIKNIVAVKYEEKIYHHMKIDEWRAYFTRLGLVEIEVSRSCFEQAELMLQNFAsGKSCLLVRN 407
                          ******8886.777888888888.********************************************************8888999999 PP

                 GRAS 355 sgslvlgWkdrpLvsvSaWr 374
                           ++l+ gWk+ + +svSaW+
  Manes.03G203200.1.p 408 GKCLICGWKGTSHFSVSAWK 427
                          99*****************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098533.34729406IPR005202Transcription factor GRAS
PfamPF035145.7E-7258427IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 433 aa     Download sequence    Send to blast
MAGVHRLSTE EVMRISRERF IHIYTQHYID LSTIHHFFDA SLFDLSGEEI KDVELALLLL  60
ASAHKVSNQQ FDAASKFLNL CAFLSSRTGS SVQRVIHYFT KALQERISRR IGIVPLNGSE  120
SKERMLLHPS QTTVRFDPAL ISCSLKLPCV QLTKFAGVQA VIDNLPSARK VHLINLSIGT  180
GGNCTVLMQA LANRQDCPVE LLKITAVGVT ALRQNFEDTG KRLACFAETL KLPFFFQTVT  240
FVNIKDLKED MFELSNDEEI AIFAPCIVRN IKAQPGCLSS LVRVLRNLNP CVLVMIELEA  300
NHSSTIFIDQ FVEALQFYSS CFDCIQDCID QSESRIAAEA FLGQEIKNIV AVKYEEKIYH  360
HMKIDEWRAY FTRLGLVEIE VSRSCFEQAE LMLQNFASGK SCLLVRNGKC LICGWKGTSH  420
FSVSAWKFHR RR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A8e-316342627378Protein SCARECROW
5b3h_A8e-316342626377Protein SCARECROW
5b3h_D8e-316342626377Protein SCARECROW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.03G203200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021607512.10.0DELLA protein RGL1-like
TrEMBLA0A2C9W9650.0A0A2C9W965_MANES; Uncharacterized protein
STRINGcassava4.1_029584m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47933162
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.11e-53RGA-like 1