PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.03G156900.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | MYB | ||||||||
Protein Properties | Length: 250aa MW: 28977.8 Da PI: 9.3761 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 59.2 | 9e-19 | 22 | 69 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd ll++ v+++G g+W+++ar g++R +k+c++rw +yl Manes.03G156900.2.p 22 KGPWTAEEDRLLIEHVRLHGEGRWNSVARLAGLKRNGKSCRLRWVNYL 69 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 32.3 | 2.3e-10 | 76 | 115 | 2 | 47 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 g T+ E+ +++++++ + W+tIar ++ gRt++++k++w+++ Manes.03G156900.2.p 76 GQITPHEESIILELHA----R-WSTIARSLP-GRTDNEIKNYWRTH 115 5556666666666665....5.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 24.363 | 17 | 73 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.4E-26 | 19 | 112 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.7E-16 | 21 | 71 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.1E-17 | 22 | 69 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.6E-23 | 23 | 76 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.05E-12 | 24 | 69 | No hit | No description |
PROSITE profile | PS51294 | 12.74 | 74 | 120 | IPR017930 | Myb domain |
SMART | SM00717 | 8.4E-7 | 74 | 118 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.1E-7 | 77 | 115 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.9E-19 | 77 | 119 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 250 aa Download sequence Send to blast |
MSLGVMAGQL TWGGFIEEGW RKGPWTAEED RLLIEHVRLH GEGRWNSVAR LAGLKRNGKS 60 CRLRWVNYLS PDLKRGQITP HEESIILELH ARWSTIARSL PGRTDNEIKN YWRTHFKKKA 120 KLSPENSEKA KTRLLKRQLF QQQQQQQQLQ QQQQQQQMQL NQLDMKKIMS LLDENETKVP 180 YMNQTRQDMT TTYPNTTEEH GLLYNLLNAN ASVPEASNEE FLWDGLWNLD DFHGNFGVAC 240 ASTKLAFTI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 2e-24 | 22 | 120 | 27 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.03G156900.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021673983.1 | 1e-136 | transcription factor MYB2-like | ||||
TrEMBL | A0A2C9W7V4 | 0.0 | A0A2C9W7V4_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_014512m | 1e-162 | (Manihot esculenta) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G24310.1 | 4e-79 | myb domain protein 305 |
Link Out ? help Back to Top | |
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Phytozome | Manes.03G156900.2.p |