PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Manes.03G090200.1.p

Organism

Manihot esculenta

Taxonomic ID

3983

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

C2H2

Protein Properties

Length: 580aa MW: 64796.7 Da PI: 10.3579

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.03G090200.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.5	0.00021	294	316	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+Cp C k+F ++ n+ H tH Manes.03G090200.1.p 294 YTCPRCLKVFLTSQNFAAHTTTH 316 9******************9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	8.24E-5	282	318	No hit	No description
PROSITE profile	PS50157	9.847	294	321	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	296	316	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 580 aa Download sequence Send to blast
MARSSDCFSS YPFGLNLADD PMDHLLSVNS NGLSLADDPM DQLLPVNSNP GQNHVNETGS 60 QLGLNGVVQT SQIPQRNPLM VALGQLGLGQ KMTEMRSTYV SPYRVLVHRD HGHPQQPKFS 120 LGEVAVTEVV TTTTRFLTPF SPREFQSRVM MNHDNNLNLC LNQNGLNFHD FFDSNVSNRS 180 QEKKPAVPES ELMKKYTAES ELMKKSATES ELRKKYAAES ELMKKSAAES ELMKKSAAES 240 ELMKKSAAES ERKKKSAAES RPSGADAERP IIDRTRKKGD GRTHSLPHKK HGPYTCPRCL 300 KVFLTSQNFA AHTTTHYKHE TLDERRKRWA AKYRKKYLHF VHQSTAGRRL TSFPNFSRVP 360 LKRKQGIQMS NKKDMQLEDE YGQRTMSPLP NQPTAGGLTS LATTSRVPLK GNEGIKRPYG 420 KEVKLEDKYR QRTMSPLRSQ PTVGGLTILP TFSRVLLKRN EGIKMSNGKA VKLEDEHGQR 480 TVSPLPNQPT AGGLISLATS SRVPLEKNQG IKMSKEKDVE LEDEDEQWII SPEAPSNSLV 540 DVRIKNKAPS NSLVDVRIKN KAPSNSLVNA RIKKEKTAI*

Sequence ? help Back to Top

Protein Sequence Length: 580 aa Download sequence Send to blast

MARSSDCFSS YPFGLNLADD PMDHLLSVNS NGLSLADDPM DQLLPVNSNP GQNHVNETGS  60
QLGLNGVVQT SQIPQRNPLM VALGQLGLGQ KMTEMRSTYV SPYRVLVHRD HGHPQQPKFS  120
LGEVAVTEVV TTTTRFLTPF SPREFQSRVM MNHDNNLNLC LNQNGLNFHD FFDSNVSNRS  180
QEKKPAVPES ELMKKYTAES ELMKKSATES ELRKKYAAES ELMKKSAAES ELMKKSAAES  240
ELMKKSAAES ERKKKSAAES RPSGADAERP IIDRTRKKGD GRTHSLPHKK HGPYTCPRCL  300
KVFLTSQNFA AHTTTHYKHE TLDERRKRWA AKYRKKYLHF VHQSTAGRRL TSFPNFSRVP  360
LKRKQGIQMS NKKDMQLEDE YGQRTMSPLP NQPTAGGLTS LATTSRVPLK GNEGIKRPYG  420
KEVKLEDKYR QRTMSPLRSQ PTVGGLTILP TFSRVLLKRN EGIKMSNGKA VKLEDEHGQR  480
TVSPLPNQPT AGGLISLATS SRVPLEKNQG IKMSKEKDVE LEDEDEQWII SPEAPSNSLV  540
DVRIKNKAPS NSLVDVRIKN KAPSNSLVNA RIKKEKTAI*

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00264	DAP	Transfer from AT2G15740	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.03G090200.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A2C9W5V4	0.0	A0A2C9W5V4_MANES; Uncharacterized protein
STRING	cassava4.1_027233m	0.0	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF18940	6	6

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G15740.1	7e-16	C2H2-like zinc finger protein

Link Out ? help Back to Top
Phytozome	Manes.03G090200.1.p