PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.03G039500.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family GRF
Protein Properties Length: 360aa    MW: 40723.2 Da    PI: 8.564
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.03G039500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC78.85.4e-2577120144
                  WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 
                          d+epgrCrRtDGKkWRCs+++++++k+CErH+hrg++rsrk++e
  Manes.03G039500.1.p  77 DPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVE 120
                          79***************************************997 PP
2QLQ561.2e-19943236
                  QLQ  2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36
                         +FTa+Q+q+L++Q+l++Ky++++ P+P +Ll+ i+
  Manes.03G039500.1.p  9 PFTASQWQELEHQALIFKYMVSGIPIPTDLLFTIK 43
                         8******************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009511.8E-10844IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166621.91944IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088805.5E-15942IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166724.9877121IPR014977WRC domain
PfamPF088791.2E-2078120IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MLSGTNKFPF TASQWQELEH QALIFKYMVS GIPIPTDLLF TIKRSCFDSP LSSKLFPRQP  60
PHIGWSCFQM GIGRKIDPEP GRCRRTDGKK WRCSKEAYPD SKYCERHMHR GKNRSRKPVE  120
VATQTVTAKN HSSLLTPPSH SLSLLSSETH QNHLHYSGYH SHLNHQFLSS QTCSRPPGIS  180
LSARDNAAPL LLDSGGSCSL TNTGDRSAYG LKEEVDEHAF FSESSGSWQF TPLTMSSSST  240
ASSSNQRNSS SLHNEYSYLQ LHSLNDHDNP KQQKHYQRSY LLGTDMKCHL PSKIDREEEP  300
QKTFHRFFDE WPPKNKDSWL DLDDKSTNST SISTTRLSIS IPSSSHDFTI FNSRTHNDG*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00263DAPTransfer from AT2G06200Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.03G039500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1826623e-68AC182662.2 Populus trichocarpa clone Pop1-15O24, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021606599.10.0growth-regulating factor 1
TrEMBLA0A2C9W6U80.0A0A2C9W6U8_MANES; Uncharacterized protein
STRINGcassava4.1_029323m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40433459
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13960.11e-54growth-regulating factor 5