PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.03G029600.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family C3H
Protein Properties Length: 387aa    MW: 42826.9 Da    PI: 7.3066
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.03G029600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.83.9e-08136156526
                          --SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                           C++f++ G Ck Gd C FaHg
  Manes.03G029600.1.p 136 ACPDFRK-GNCKKGDACEFAHG 156
                          7******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501036.0883120IPR000571Zinc finger, CCCH-type
SMARTSM003565.4E-6131157IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.751132158IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-5135158IPR000571Zinc finger, CCCH-type
PfamPF006423.4E-6136156IPR000571Zinc finger, CCCH-type
SMARTSM0035613166189IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.211166190IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
MMLGERHRPD SVHVPPWDLL DDTNPEAYSL SPMSSHSSNA ATASDYNPYH LQEALAALQR  60
YLPSNEPELD SDYDLSGLET DSPVDAYSCD HFRMFEFKVR RCARGRSHDW TECPYAHPGE  120
KARRRDPRKY HYSGTACPDF RKGNCKKGDA CEFAHGVFEC WLHPARYRTQ PCKDGPNCRR  180
RVCFFAHTAE QLRVLPQQSP RSVNSFDSYD GSPLRQAIEA SCARSLPFLA SPGSVSPPAT  240
PPVDSPPMSP MTQSLSRSLG SNSINEMVAS LRNLQLGKVK SLPPSWNVHV GGSGFGSPRG  300
SMLRSGFCSL PSTPTCPTRS GLGHRDIWEN VCEEEPAMER VESGRDLRAK MFEKLSKENL  360
LDRVGPSHGG QSSNGPDVGW VSELLK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.03G029600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021608581.10.0zinc finger CCCH domain-containing protein 20-like
SwissprotQ9M0G21e-146C3H49_ARATH; Zinc finger CCCH domain-containing protein 49
TrEMBLA0A2C9W5H30.0A0A2C9W5H3_MANES; Uncharacterized protein
STRINGcassava4.1_009488m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20563176
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G19810.11e-145C3H family protein
Publications ? help Back to Top
  1. Dokládal L, et al.
    cDNA Library Screening Identifies Protein Interactors Potentially Involved in Non-Telomeric Roles of Arabidopsis Telomerase.
    Front Plant Sci, 2015. 6: p. 985
    [PMID:26617625]
  2. Min JH, et al.
    Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element.
    Front Plant Sci, 2017. 8: p. 2100
    [PMID:29321786]