PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.02G212600.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family GRAS
Protein Properties Length: 473aa    MW: 53878.6 Da    PI: 4.6365
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.02G212600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS148.27.7e-461034722374
                 GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 
                          v+lL +  ea++ +  ela+++  rl+e   p+g+++qRla y+++AL ++++            +e+    +++   a+++f++v+P+ 
  Manes.02G212600.1.p 103 VHLLKAYGEAMDIEMRELAEEITMRLKEKGYPTGSTLQRLAYYLVQALDKQVSF----------LREE---AMINYEIAFSAFYQVFPYG 179
                          788999999999999*************************************98..........3333...3777888999********* PP

                 GRAS  92 kfshltaNqaIleavege.ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg...skeeleetgerLakfAeelgvpfe 177
                          +f+h+taN+ Ilea+ ++ e+vHi+Dfdi++G+QWp++++aLa + ++  ++R T ++ ++++     ++ eet+  L++ A++ g++++
  Manes.02G212600.1.p 180 RFAHFTANSVILEAIPEDaEMVHIVDFDIGKGVQWPPIIEALAIQGGQRVEVRFTSIKWEQEEedpPLQSFEETQMLLHEHARHYGLRLK 269
                          ***************8777**************************9************9888888889999***************9999 PP

                 GRAS 178 fnv..lvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvk.slsPk....vvvvveqeadhnse.....sFle 255
                           +   lv+ + e+ +++++   + E la n+++ l ++  e+ +++s   e+Lkl k s++ k     +++ +     +++      + +
  Manes.02G212600.1.p 270 VEEkdLVSLDSEMKKTKKIGEGNYEWLAFNCMVGLPHME-ERRNVRS-VIEFLKLAKdSIRVKggggTITFGDGI-GWGKGlqgwpGYGN 356
                          87622467788888888888888***************6.6777777.778999888434443222235555432.22222344449999 PP

                 GRAS 256 rflealeyysalfdsleaklpres.eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkv 344
                           f   l  + +l++s++++lp++  e++i +E  +l + +++++ ++  + + r+       ++l+e+G++p +++++++ +ak l+r+ 
  Manes.02G212600.1.p 357 IFEGQLGQFKTLLESMDNQLPHHLrEAKIAIECLFLIPYVSSLIDMQMWKEIYRES------RALSEVGLEPWSMRNDNVLEAKELVREG 440
                          *********************99879999*******************99555554......89*************************9 PP

                 GRAS 345 ksdgyrve...eesgslvlgWkdrpLvsvSaWr 374
                          +s  y v     +++++vlg ++ pLv vS+Wr
  Manes.02G212600.1.p 441 ESS-YWVRiegVKQNQMVLGYRGTPLVKVSSWR 472
                          944.555533777*******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098523.09376450IPR005202Transcription factor GRAS
PfamPF035142.6E-43103472IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 473 aa     Download sequence    Send to blast
MFPDLRPSLA ASVDNLPSLE TRKEQLMVDG VKDFGDDCMV SNTSLLPLRE YYFLEDDVEL  60
QNLHMSPIAS KHQAMDDVNS SNDTGPLIFP GDGMEVDECL SIVHLLKAYG EAMDIEMREL  120
AEEITMRLKE KGYPTGSTLQ RLAYYLVQAL DKQVSFLREE AMINYEIAFS AFYQVFPYGR  180
FAHFTANSVI LEAIPEDAEM VHIVDFDIGK GVQWPPIIEA LAIQGGQRVE VRFTSIKWEQ  240
EEEDPPLQSF EETQMLLHEH ARHYGLRLKV EEKDLVSLDS EMKKTKKIGE GNYEWLAFNC  300
MVGLPHMEER RNVRSVIEFL KLAKDSIRVK GGGGTITFGD GIGWGKGLQG WPGYGNIFEG  360
QLGQFKTLLE SMDNQLPHHL REAKIAIECL FLIPYVSSLI DMQMWKEIYR ESRALSEVGL  420
EPWSMRNDNV LEAKELVREG ESSYWVRIEG VKQNQMVLGY RGTPLVKVSS WR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A5e-1413547236375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.02G212600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021603883.10.0nodulation-signaling pathway 2 protein-like
TrEMBLA0A2C9WG020.0A0A2C9WG02_MANES; Uncharacterized protein
STRINGcassava4.1_032945m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42742761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.13e-22GRAS family protein