PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.02G204800.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family GRAS
Protein Properties Length: 575aa    MW: 65206.4 Da    PI: 4.8966
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.02G204800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS280.45.4e-862035714374
                 GRAS   4 lLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl....fsevsP 89 
                           Ll+ Ae + ++++ +a++lL+  s+ +s+ g+p+qR+++yf+e L++r++ ++ ++ ++   s++s  + ++++ a +      +++ P
  Manes.02G204800.1.p 203 FLLASAEKIGNQQFDCASRLLKACSNFSSSVGNPVQRVVHYFAEVLRERINIETGRITSKGLGSKQSF-DIEKAILAPNPttleAYKLVP 291
                          58999**********************************************96666665554444432.344444433223557899*** PP

                 GRAS  90 ilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfef 178
                          + ++ h++  qaI+e ++ ++r+HiiDf i++GlQW  L+qaL sR+e p   l+iT+++    g ++ +e+tg+rL++fA++++++f+f
  Manes.02G204800.1.p 292 FCQIVHFAGIQAIVENIADAKRIHIIDFTIKNGLQWSILMQALVSRREFPVeLLKITAIST---GWENLIETTGKRLTSFAQTMNLNFSF 378
                          ********************************************9996655499*******...789999******************** PP

                 GRAS 179 nvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalf 268
                          +++v++++ dl+ + L+++ +E++a+ + +    l++++ +l+++ +++++l+k++ P v+vv+e ea++ns++F++rf+eal yy+a f
  Manes.02G204800.1.p 379 KIVVVSDFLDLKEDLLQLDDEETVAIFSEH----LPRSQITLPNRLESMMRLIKKIHPCVMVVAEVEANCNSPTFVNRFIEALFYYTAYF 464
                          *************************98766....777889999999******************************************** PP

                 GRAS 269 dsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgs 357
                          d+++a + r++++r  +E ++lg+ i+n +a eg++ + r  +l  Wr+   ++G+ ++ ls++   qa+l++++++     +++++ +s
  Manes.02G204800.1.p 465 DCVDACMERDDSNRLILESMYLGKGIRNNIASEGEQPKIRSVKLDVWRSFYARFGMVEIDLSSSSLLQANLIMKNFPcASFCTLDQSGKS 554
                          *****************************************************************************7777899999*** PP

                 GRAS 358 lvlgWkdrpLvsvSaWr 374
                          l+ gWk+ pL s+SaW+
  Manes.02G204800.1.p 555 LLVGWKGTPLHSLSAWK 571
                          ****************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098541.133174550IPR005202Transcription factor GRAS
PfamPF035141.9E-83203571IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 575 aa     Download sequence    Send to blast
MENEMFSFNE LNYSGFQDKF VSIDPESDGG DMATKVPFYE AQEWRDSDYG FHQEKLREEE  60
QLQQSFLDYV QFDDLRFHIF CPPLKTCLDE MTKPGEIQNE IQEVESKEDK SYPFSLESLQ  120
LLRNHSNEFK QFRSGRVIEP SNCFPPTKDT GQRLSAEEII RLAGAKFIQS AYQGVDVSSI  180
FSNPFYLSGL SADDAKMVEL AGFLLASAEK IGNQQFDCAS RLLKACSNFS SSVGNPVQRV  240
VHYFAEVLRE RINIETGRIT SKGLGSKQSF DIEKAILAPN PTTLEAYKLV PFCQIVHFAG  300
IQAIVENIAD AKRIHIIDFT IKNGLQWSIL MQALVSRREF PVELLKITAI STGWENLIET  360
TGKRLTSFAQ TMNLNFSFKI VVVSDFLDLK EDLLQLDDEE TVAIFSEHLP RSQITLPNRL  420
ESMMRLIKKI HPCVMVVAEV EANCNSPTFV NRFIEALFYY TAYFDCVDAC MERDDSNRLI  480
LESMYLGKGI RNNIASEGEQ PKIRSVKLDV WRSFYARFGM VEIDLSSSSL LQANLIMKNF  540
PCASFCTLDQ SGKSLLVGWK GTPLHSLSAW KFGL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A1e-3820857026377Protein SCARECROW
5b3h_D1e-3820857026377Protein SCARECROW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.02G204800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021603857.10.0DELLA protein RGL1-like
TrEMBLA0A2C9WFS00.0A0A2C9WFS0_MANES; Uncharacterized protein
STRINGcassava4.1_021945m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47933162
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.17e-46RGA-like 1