PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Manes.02G204600.1.p

Organism

Manihot esculenta

Taxonomic ID

3983

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

GRAS

Protein Properties

Length: 582aa MW: 65737.7 Da PI: 4.5877

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.02G204600.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	279.3	1.2e-85	208	578	2	374
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetseknsseelaalkl...fsev 87 e Ll+ Ae + ++++ a++ L+ s +s+dg+p++R++ +f+eAL++++ ++ ++k l ++ + + ++ ++a + +++ Manes.02G204600.1.p 208 AESLLASAEKIGNQQFDVASRSLKLCSSSSSSDGNPVERVVYHFAEALREKIETeTGRFISKGLGKKQLFDIE-KSMMNANPTilaAHQA 296 57899***********************************************96677778888555554322.222233222345899 PP GRAS 88 sPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpf 176 P+ ++ h++ qaI++ v+ ++r+HiiDf i +GlQW L+qaL sR e p l+iT++ ++ +++tg+rL++fA++++++f Manes.02G204600.1.p 297 IPFSQIFHFAGIQAIVDNVADARRIHIIDFTIRNGLQWTVLMQALVSRHECPVeLLKITAITT---ACENLIQTTGKRLTSFAHTMNLNF 383 ***********************************************7665499**9...68999*************** PP GRAS 177 efnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysa 266 +f+++v++++ dl+ ++L+++ +E+la+ + +l l+++ ++v++++k+++P v+vvve ea++ns++F++rf+eal yysa Manes.02G204600.1.p 384 SFKIVVVSDFLDLKEDMLELDDEETLAIYTEYFPRSLI----VLPKRLESVMRVIKNINPCVMVVVEVEANYNSPTFVNRFIEALFYYSA 469 *************************999888887....55566666************************************ PP GRAS 267 lfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveees 355 fd++ea + r++++r +E ++ gr+i+ ++a e++er r +l Wr+ +++G+ ++ ls++ qa+l+++k++ + +++++ Manes.02G204600.1.p 470 YFDCFEACMERDDSNRLILESMYSGRAIRCILAIEEEERMIRSVKLDVWRSFYGRFGMMEIDLSSSSLLQANLIVKKFAcGIYCTLDQNG 559 ***************************************************************************66667899999 PP GRAS 356 gslvlgWkdrpLvsvSaWr 374 sl+ gWk+ pL s+SaW+ Manes.02G204600.1.p 560 RSLIVGWKGTPLHSLSAWK 578 9***************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	41.611	181	557	IPR005202	Transcription factor GRAS
Pfam	PF03514	4.0E-83	208	578	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 582 aa Download sequence Send to blast
MENAKFSFNE LSCSGFQDNF VSQTVGSEVA DCGDTRNDSF CSDYGFCQEN FWDKESLISR 60 YEEQEQLQQS FLDYMQFDDL RSNILSPPLE ICLEEITKLG EIQNGVQGDD PKEDKSYPIS 120 LESLQLLRNY STGFKQLTSG RVIEPSDCIR PANVSGQGLS TEDIIRIAGA RFIQSSCHGF 180 DVDSMFNNPF YLSSSGLSDE DTKMVQLAES LLASAEKIGN QQFDVASRSL KLCSSSSSSD 240 GNPVERVVYH FAEALREKIE TETGRFISKG LGKKQLFDIE KSMMNANPTI LAAHQAIPFS 300 QIFHFAGIQA IVDNVADARR IHIIDFTIRN GLQWTVLMQA LVSRHECPVE LLKITAITTA 360 CENLIQTTGK RLTSFAHTMN LNFSFKIVVV SDFLDLKEDM LELDDEETLA IYTEYFPRSL 420 IVLPKRLESV MRVIKNINPC VMVVVEVEAN YNSPTFVNRF IEALFYYSAY FDCFEACMER 480 DDSNRLILES MYSGRAIRCI LAIEEEERMI RSVKLDVWRS FYGRFGMMEI DLSSSSLLQA 540 NLIVKKFACG IYCTLDQNGR SLIVGWKGTP LHSLSAWKFV L*

Sequence ? help Back to Top

Protein Sequence Length: 582 aa Download sequence Send to blast

MENAKFSFNE LSCSGFQDNF VSQTVGSEVA DCGDTRNDSF CSDYGFCQEN FWDKESLISR  60
YEEQEQLQQS FLDYMQFDDL RSNILSPPLE ICLEEITKLG EIQNGVQGDD PKEDKSYPIS  120
LESLQLLRNY STGFKQLTSG RVIEPSDCIR PANVSGQGLS TEDIIRIAGA RFIQSSCHGF  180
DVDSMFNNPF YLSSSGLSDE DTKMVQLAES LLASAEKIGN QQFDVASRSL KLCSSSSSSD  240
GNPVERVVYH FAEALREKIE TETGRFISKG LGKKQLFDIE KSMMNANPTI LAAHQAIPFS  300
QIFHFAGIQA IVDNVADARR IHIIDFTIRN GLQWTVLMQA LVSRHECPVE LLKITAITTA  360
CENLIQTTGK RLTSFAHTMN LNFSFKIVVV SDFLDLKEDM LELDDEETLA IYTEYFPRSL  420
IVLPKRLESV MRVIKNINPC VMVVVEVEAN YNSPTFVNRF IEALFYYSAY FDCFEACMER  480
DDSNRLILES MYSGRAIRCI LAIEEEERMI RSVKLDVWRS FYGRFGMMEI DLSSSSLLQA  540
NLIVKKFACG IYCTLDQNGR SLIVGWKGTP LHSLSAWKFV L*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	2e-35	215	577	27	378	Protein SCARECROW
5b3h_A	2e-35	215	577	26	377	Protein SCARECROW
5b3h_D	2e-35	215	577	26	377	Protein SCARECROW
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.02G204600.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021596881.1	0.0	DELLA protein RGL1-like
TrEMBL	A0A2C9WFR5	0.0	A0A2C9WFR5_MANES; Uncharacterized protein
STRING	cassava4.1_030508m	0.0	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF479	33	162

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G03450.1	4e-45	RGA-like 2

Link Out ? help Back to Top
Phytozome	Manes.02G204600.1.p