PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.02G195200.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | C2H2 | ||||||||
Protein Properties | Length: 364aa MW: 42293.3 Da PI: 8.4362 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 21.1 | 8.1e-07 | 65 | 86 | 2 | 23 |
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C+ Cg sF+ + +Lk+H+++H Manes.02G195200.1.p 65 TCQECGASFKKPAYLKQHMQSH 86 6*******************99 PP | |||||||
2 | zf-C2H2 | 19.3 | 3.2e-06 | 92 | 116 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 ++C+ dC+ s++rk++L+rH+ tH Manes.02G195200.1.p 92 FVCSadDCHASYRRKDHLTRHLLTH 116 89*********************99 PP | |||||||
3 | zf-C2H2 | 14.6 | 9.2e-05 | 121 | 146 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 +kCp +C++ F + n krH + H Manes.02G195200.1.p 121 FKCPikNCNREFIFQGNVKRHVKElH 146 89********************9988 PP | |||||||
4 | zf-C2H2 | 23.4 | 1.5e-07 | 160 | 184 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 y+C+ Cgk+F+ +s L++H +H Manes.02G195200.1.p 160 YVCHeiGCGKVFKYPSKLQKHEESH 184 9********************9988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00355 | 15 | 20 | 42 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.224 | 20 | 47 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0043 | 64 | 86 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 12.445 | 64 | 91 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 2.0E-7 | 65 | 92 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 66 | 86 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 4.13E-10 | 78 | 118 | No hit | No description |
PROSITE profile | PS50157 | 10.076 | 92 | 121 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.023 | 92 | 116 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 1.3E-9 | 93 | 118 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 94 | 116 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 9.38E-7 | 102 | 151 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 3.1E-4 | 119 | 143 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.021 | 121 | 146 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 11.635 | 121 | 151 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 123 | 146 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.16E-5 | 155 | 186 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 2.9E-8 | 156 | 184 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.0012 | 160 | 184 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 11.198 | 160 | 189 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 162 | 184 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 13 | 192 | 217 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 194 | 217 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 7.4 | 220 | 241 | IPR015880 | Zinc finger, C2H2-like |
SuperFamily | SSF57667 | 1.83E-6 | 231 | 288 | No hit | No description |
PROSITE profile | PS50157 | 10.803 | 251 | 281 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.1 | 251 | 276 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 1.6E-4 | 252 | 280 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 253 | 276 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 8.1E-4 | 281 | 304 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 8 | 282 | 308 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 284 | 308 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005730 | Cellular Component | nucleolus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008097 | Molecular Function | 5S rRNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding | ||||
GO:0080084 | Molecular Function | 5S rDNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 364 aa Download sequence Send to blast |
MEETAEIERP RPIFRDIRRY FCDYCGICRS KKSLITSHIQ THHKEEMDKE EAHGEEKIEG 60 VKSNTCQECG ASFKKPAYLK QHMQSHSLMR PFVCSADDCH ASYRRKDHLT RHLLTHEGKL 120 FKCPIKNCNR EFIFQGNVKR HVKELHSENS PPTNVGQKQY VCHEIGCGKV FKYPSKLQKH 180 EESHVKLESV EAFCAEPGCM KHFSNAECLK AHIHSCHRYV TCEICGTEQL KKNLKRHLRT 240 HEVGGQSMER IKCHFEDCCH TFSSKTNLNL HIKALHLEGR PFTCGFPGCD MRFAYKHVRD 300 KHEKSGCHVY TLGDFEESDE QFRSRARGGR KRKCPTVEML IRKRVTPPTD LDECHAWFQS 360 MES* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1tf6_A | 4e-17 | 68 | 212 | 19 | 155 | PROTEIN (TRANSCRIPTION FACTOR IIIA) |
1tf6_D | 4e-17 | 68 | 212 | 19 | 155 | PROTEIN (TRANSCRIPTION FACTOR IIIA) |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Essential protein (PubMed:22353599). Isoform 1 is a transcription activator the binds both 5S rDNA and 5S rRNA and stimulates the transcription of 5S rRNA gene (PubMed:12711688, PubMed:22353599). Isoform 1 regulates 5S rRNA levels during development (PubMed:22353599). {ECO:0000269|PubMed:12711688, ECO:0000269|PubMed:22353599}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00229 | DAP | Transfer from AT1G72050 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.02G195200.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021605191.1 | 0.0 | transcription factor IIIA-like | ||||
Swissprot | Q84MZ4 | 1e-148 | TF3A_ARATH; Transcription factor IIIA | ||||
TrEMBL | A0A2C9WI28 | 0.0 | A0A2C9WI28_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_010279m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3069 | 33 | 70 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72050.2 | 1e-150 | transcription factor IIIA |
Link Out ? help Back to Top | |
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Phytozome | Manes.02G195200.1.p |