PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.02G195000.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | ZF-HD | ||||||||
Protein Properties | Length: 257aa MW: 28614.9 Da PI: 8.5987 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 91.4 | 8.1e-29 | 41 | 92 | 4 | 56 |
ZF-HD_dimer 4 vrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRre 56 v+YkeC++NhAas+G ha DGCgEf+p g++gt + l+CaACgCHRnFHRre Manes.02G195000.1.p 41 VKYKECMRNHAASIGRHANDGCGEFIPR-GDDGTREFLTCAACGCHRNFHRRE 92 89*************************9.999********************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 7.2E-28 | 41 | 92 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 4.0E-17 | 41 | 92 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 1.3E-25 | 42 | 92 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 25.187 | 43 | 92 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 9.79E-19 | 152 | 225 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.0E-29 | 155 | 226 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 3.8E-27 | 165 | 220 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 257 aa Download sequence Send to blast |
MDLSLVPYQH TSPSLPHHHD HDHPRSQHPI IIRPNPDNYL VKYKECMRNH AASIGRHAND 60 GCGEFIPRGD DGTREFLTCA ACGCHRNFHR REGGASSSLQ HYDHHYQVFS YNAASGKKHL 120 MSSYFDDGTD IDDHDRRSET PEREEVNVAS GGRSGAAAAA GMKNKRFRTK FTQEQKERML 180 GFAEKIGWRI NKNDDVALNN FCNEVGVKRS VLKVWMHNNK SAHRRKEAAP PVSPVAAPPP 240 PPPPDQPPAP PQPAGV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 2e-25 | 165 | 222 | 18 | 75 | ZF-HD homeobox family protein |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.02G195000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021603363.1 | 0.0 | zinc-finger homeodomain protein 2-like | ||||
TrEMBL | A0A2C9WHS2 | 0.0 | A0A2C9WHS2_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_025934m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF15092 | 10 | 14 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24660.1 | 2e-51 | homeobox protein 22 |
Link Out ? help Back to Top | |
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Phytozome | Manes.02G195000.1.p |