PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.02G176400.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | Dof | ||||||||
Protein Properties | Length: 294aa MW: 32858.3 Da PI: 4.4553 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 120 | 8.7e-38 | 32 | 88 | 6 | 62 |
zf-Dof 6 lkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +cprC s+ntkfCyynnyslsqPryfCk+CrryWtkGG+lrnvPvGgg+rk ++++ Manes.02G176400.1.p 32 PHCPRCASSNTKFCYYNNYSLSQPRYFCKGCRRYWTKGGSLRNVPVGGGCRKTRRAK 88 58***************************************************9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 3.0E-28 | 15 | 86 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.453 | 32 | 86 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 5.6E-32 | 33 | 86 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 34 | 70 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 294 aa Download sequence Send to blast |
MNMYISDQML LQCPPRPLPM ERKWKSQVEL APHCPRCASS NTKFCYYNNY SLSQPRYFCK 60 GCRRYWTKGG SLRNVPVGGG CRKTRRAKSV RVSQNDREGF GKNDFSGFDG RINGSTGDSM 120 AQGTVANGSS SEIDLAVVFA KFLNQDSSFH PEFQAQETST APNSSTPDSA VIEGDDKITD 180 LIQESDLLLE GLPPVTVRDH EQQEDEERIQ ELLESQDMDA FGLQTLLGDE MVQDALWSET 240 ATLPNFTWET VQPQQEFYSF SVDDQLKISA NNHTTDNAWS CLDLSGFEVS SRP* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.02G176400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021605594.1 | 0.0 | dof zinc finger protein DOF1.2-like | ||||
TrEMBL | A0A2C9WEY0 | 0.0 | A0A2C9WEY0_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_033042m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1817 | 33 | 94 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G21340.1 | 7e-50 | Dof family protein |
Link Out ? help Back to Top | |
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Phytozome | Manes.02G176400.1.p |