PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.02G161100.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family GRAS
Protein Properties Length: 494aa    MW: 54250.8 Da    PI: 5.9754
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.02G161100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS351.71.1e-1071034861374
                 GRAS   1 lvelLlecAeavssgdle..laqalLarlselaspdg.dpmqRlaayfteALaarlarsvs.elykalppsetsekn......sseelaa 80 
                          lv+lL+++Aea++  +++  la+ +L rl+el+sp++ ++m+Rlaayft AL+  l + +  +  ++++  + ++++      +++ laa
  Manes.02G161100.1.p 103 LVHLLMAAAEALTGVNKSrdLARVILVRLKELVSPNDgTNMERLAAYFTDALQGLLEGAGGgHGKNSINNGPYHHHHrddhhhQEDILAA 192
                          68***********96665559***********8887669*****************9954303333444433333333346778999999 PP

                 GRAS  81 lklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp..slRiTgvgspesg..skeeleetgerLa 166
                          ++l++++sP+lkf+h+taNqaIleav++++r+Hi+D+di++G+QW++L+q+L sR++gpp  +lRiT+++++ sg  s  +++etg+rL 
  Manes.02G161100.1.p 193 FQLLQDMSPYLKFGHFTANQAILEAVAQDRRIHIVDYDIMEGIQWASLMQSLVSRTDGPPtpHLRITALSRSGSGkkSIGTVQETGRRLV 282
                          ********************************************************776556*********8888888899********* PP

                 GRAS 167 kfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh.nsesFle 255
                           fA+++g+pf+f+    ++ e++++++L++ +gEal++n++lql ++       ++ ++++L+  k+l+P++v++ve+e+   +++ F+ 
  Manes.02G161100.1.p 283 AFAASIGLPFSFHQCRLDSDENFRPNALKLVRGEALVINCMLQLPHFS---YRAPDSITSFLSGAKTLNPRLVTLVEEEVGSiGDGGFVS 369
                          **************9999*****************************8...455555679*******************9988******* PP

                 GRAS 256 rflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk 345
                          rf+++l++ysa++dslea++p +s++r+ vEr++lg++i   +a   ++r   +e+ ++W erl+++GF+++++s  + +qakll+  ++
  Manes.02G161100.1.p 370 RFINSLHHYSAVYDSLEASFPMQSRARALVERVFLGPQIAGTLARIYRARA--NEEGSSWGERLGAVGFRAANISFANHCQAKLLIGLFN 457
                          **********************************************99955..56679******************************** PP

                 GRAS 346 sdgyrveee.sgslvlgWkdrpLvsvSaWr 374
                           dgyrve+   + lvlgWk+r+L+s+S W+
  Manes.02G161100.1.p 458 -DGYRVEKLdGNRLVLGWKSRRLLSASIWT 486
                          .******87255688**************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098553.73477466IPR005202Transcription factor GRAS
PfamPF035143.9E-105103486IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 494 aa     Download sequence    Send to blast
MAMAIDGALE LDFSGYSSTA TNTTTTTTTS TENDQHDGNW NGWSPVVDWE ALSAHHDDFQ  60
DLIESMMDDG GLNQTTCNSN SLSTDTMMVD DETSSEDFKG LRLVHLLMAA AEALTGVNKS  120
RDLARVILVR LKELVSPNDG TNMERLAAYF TDALQGLLEG AGGGHGKNSI NNGPYHHHHR  180
DDHHHQEDIL AAFQLLQDMS PYLKFGHFTA NQAILEAVAQ DRRIHIVDYD IMEGIQWASL  240
MQSLVSRTDG PPTPHLRITA LSRSGSGKKS IGTVQETGRR LVAFAASIGL PFSFHQCRLD  300
SDENFRPNAL KLVRGEALVI NCMLQLPHFS YRAPDSITSF LSGAKTLNPR LVTLVEEEVG  360
SIGDGGFVSR FINSLHHYSA VYDSLEASFP MQSRARALVE RVFLGPQIAG TLARIYRARA  420
NEEGSSWGER LGAVGFRAAN ISFANHCQAK LLIGLFNDGY RVEKLDGNRL VLGWKSRRLL  480
SASIWTSPFD SDL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A3e-589648612379Protein SCARECROW
5b3h_A3e-589648611378Protein SCARECROW
5b3h_D3e-589648611378Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator essential for Nod-factor-induced gene expression. Acts downstream of calcium spiking and DMI3, a calcium/calmodulin-dependent protein kinase (CCaMK). {ECO:0000269|PubMed:15961668}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.02G161100.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced 24 hours after treatment with Nod factor or Sinorhizobium meliloti. {ECO:0000269|PubMed:15961668}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021605410.10.0nodulation-signaling pathway 2 protein-like
SwissprotQ5NE240.0NSP2_MEDTR; Nodulation-signaling pathway 2 protein
TrEMBLA0A2C9WFX00.0A0A2C9WFX0_MANES; Uncharacterized protein
STRINGcassava4.1_030763m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62643152
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.11e-162GRAS family protein
Publications ? help Back to Top
  1. Tang H, et al.
    An improved genome release (version Mt4.0) for the model legume Medicago truncatula.
    BMC Genomics, 2014. 15: p. 312
    [PMID:24767513]