PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.02G151500.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | C2H2 | ||||||||
Protein Properties | Length: 281aa MW: 31352.7 Da PI: 8.7918 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 18 | 7.8e-06 | 123 | 142 | 1 | 20 |
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++C+ C k+F+r nL+ H+ Manes.02G151500.1.p 123 FSCHVCFKTFNRYNNLQMHM 142 89*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 6.07E-5 | 116 | 145 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 3.2E-4 | 123 | 142 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 10.055 | 123 | 150 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 125 | 145 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 3.47E-5 | 189 | 227 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009813 | Biological Process | flavonoid biosynthetic process | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 281 aa Download sequence Send to blast |
MESSHLVCDA DSLLLSSTPS TDINTNRHTD IEPLELFPSA SYSSIQHTPL LSSFLSSPHP 60 SLIENPKASS TDGDKEEVTV ALHIGLPDHS HSSINPNVKV HANVVTKYWI PTPEQILIGF 120 THFSCHVCFK TFNRYNNLQM HMWGHGSQYR RGPESLKGTQ PRAMLGIPCY CCAEGCKNNI 180 QHPKAKPLKD FRTLQTHYKR KHGLKPFMCR KCGKFLAVKG DWRTHEKNCG KRWLCICGSD 240 FKHKRSLKDH IKAFGSGHGP FPPSSSYDGI QLFDDGSALA * |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | May act as a transcriptional regulator involved in the differentiation of young endothelium. Altered differentiation results in incompetence for pigments synthesis and the lack of condensed tannins in the seed coat (PubMed:21477081). Plays a role in the regulatory network controlling flavonoid accumulation in endothelium cells during seed development (PubMed:21477081). {ECO:0000269|PubMed:11782451, ECO:0000269|PubMed:21477081}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.02G151500.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021603800.1 | 0.0 | protein TRANSPARENT TESTA 1 | ||||
Swissprot | Q8VWG3 | 1e-108 | TT1_ARATH; Protein TRANSPARENT TESTA 1 | ||||
TrEMBL | A0A2C9WFL2 | 0.0 | A0A2C9WFL2_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_023114m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF170 | 34 | 289 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G34790.1 | 1e-102 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Manes.02G151500.1.p |
Publications ? help Back to Top | |||
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