PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.02G140500.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family HB-other
Protein Properties Length: 533aa    MW: 59493.7 Da    PI: 8.2076
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.02G140500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.13.6e-192175357
                         --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
             Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57
                         kR   t+ q+ +Le+++++++yp++e++ eLAk++gLte+q++ WF+ rR k+k+
  Manes.02G140500.1.p 21 KRILKTPAQIMALEKFYNEHNYPTEEMKSELAKQIGLTEKQISSWFCHRRLKDKR 75
                         78899************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.1E-23275IPR009057Homeodomain-like
SuperFamilySSF466897.7E-181578IPR009057Homeodomain-like
PROSITE profilePS5007116.9251676IPR001356Homeobox domain
SMARTSM003894.4E-201880IPR001356Homeobox domain
CDDcd000867.26E-182175No hitNo description
PfamPF000461.3E-162175IPR001356Homeobox domain
PROSITE patternPS0002705174IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 533 aa     Download sequence    Send to blast
MEDSSEVHSE ENGESTEKNT KRILKTPAQI MALEKFYNEH NYPTEEMKSE LAKQIGLTEK  60
QISSWFCHRR LKDKRLSKDE ALDKRLSKDE TFDRRLSKDE TCAIGRQDRS SGIIQDRGSG  120
LWQDSCGSTK QSDYRKVDLK EVESQRLYGH SLSAADVTYD HTSRYTGKVN GMDDTSSESS  180
SSLQDKLFSQ SEDPHDMKTS SYITQNGASR PLIPKGANNM GYKPSGYLKV KGEIENAAIT  240
AVKRQLGKHY REDGPPLGVE FQPLPPGAFS SSNRDAVNAY CVGNLARIHS PEVSGVHKQS  300
SIIGRHGIYS SKVSSQDSYM KEPNCNLKYA SDSHEKKSHH RLKKKASSCN FSNSTPGGKS  360
AMDKCDDLAA EISVHSSKRN YKLNSKHAVE AIRPDTVSND HHPDGGKVIS EQTEHWLHDY  420
GNGSPNVVQN NDYMSKSSNL IPGSSKSLDT QERVLYTRMA KEKLCGEMKG TKEYQDTVRV  480
SKRFRSEFFQ QDYVTKAAFP NVPRNTSNKG SAMERPSSFS EDETAETNSS VD*
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.02G140500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021604488.10.0homeobox-DDT domain protein RLT1-like isoform X2
TrEMBLA0A2C9WDQ90.0A0A2C9WDQ9_MANES; Uncharacterized protein
STRINGcassava4.1_003777m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF57923051
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G03250.12e-93HB-other family protein