PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.02G134000.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | C2H2 | ||||||||
Protein Properties | Length: 492aa MW: 53379.4 Da PI: 8.3636 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 15.4 | 5.4e-05 | 379 | 401 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C +C+k+Fs+ L H r H Manes.02G134000.1.p 379 FRCDICNKTFSTAQGLGCHKRIH 401 89******************999 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.01E-9 | 53 | 76 | No hit | No description |
SMART | SM00355 | 0.16 | 54 | 76 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.785 | 54 | 76 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 3.8E-8 | 54 | 78 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 56 | 76 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.01E-9 | 374 | 401 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 9.9E-5 | 378 | 402 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 11.198 | 379 | 406 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.013 | 379 | 401 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 2.1E-7 | 379 | 403 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 381 | 401 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 492 aa Download sequence Send to blast |
MSFKIILHRR VLLPRLRKLS VKFKLPNNTT MESGGEGEGG GGEGSGSSGK REKHVCEFCG 60 KKFSSGQALG GHKKHHLRIM RNNSKRTQEE EESNIKIKKE EHGGSKRCST SKAGDVEIDS 120 DGKPICYSVQ GSPRNQINSA AEIEAADALL MLSLAPRHGP KTSGYATTSS EKAIRTEIES 180 GSISDHNSKE DEDIIKETTA KKGKEMNYIS NLTNSEIEAA RNLLLLSRAG TYGHGHGHEP 240 ETSGYATTSS GKSIRTEIGS GSGSGIGPDH GSKEDEDITK ETCGLITTKK GKKMNYISKL 300 RNAERKPCES KCSNCGKSFR SRSPCRCKNN SKVQVAESAL PDDDAITAKE IPASKPDKEA 360 GKTGDNDSYH PVASTETSFR CDICNKTFST AQGLGCHKRI HRKAPARPLL NEAALAQASN 420 KVGSKTASSG EAEANQAGHG IFDIDLNKRY LMQEGEEDNT ALNKRYLRQE GEEDNIDLNK 480 PYLMKEGEED W* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.02G134000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021598641.1 | 0.0 | uncharacterized protein LOC110604678 isoform X1 | ||||
TrEMBL | A0A2C9WDJ0 | 0.0 | A0A2C9WDJ0_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_026658m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF9737 | 24 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G56200.1 | 7e-06 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Manes.02G134000.1.p |