PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Manes.02G130900.1.p

Organism

Manihot esculenta

Taxonomic ID

3983

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

GRAS

Protein Properties

Length: 703aa MW: 80019.8 Da PI: 5.848

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.02G130900.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	387.1	2e-118	329	698	3	374
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92 +lL++cA+av+ +d++ a++lL ++ +++s +gd +qRla+yf +AL++rla++ y l ++++ +s+ l+a++++++++P+ k Manes.02G130900.1.p 329 TLLTQCAQAVAINDQRTATELLRQIGQHSSAYGDGNQRLAHYFSKALETRLAGTRMPKYIPLVSNKA---PVSDILKAYQVYVKACPFKK 415 68*************************************************44444444444444...49************** PP GRAS 93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnv 180 +s++ aNq+I + +e+++r+H+iDf+i +G+QWp+L+q L++Rp+gpp+lRiTg++ p++g +e++eetg+rL++++e+++vpfe+nv Manes.02G130900.1.p 416 MSNFFANQTIFKLAEKSTRLHVIDFGILYGFQWPCLIQRLSQRPGGPPKLRITGIELPQPGfrPAERVEETGHRLQRYCERFNVPFEYNV 505 ********************************************************9************************9 PP GRAS 181 lvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfds 270 +a+++e++++e+L+++++E+++Vn+ ++ +l+d++v +s+rd+vLkl+++++P+++++ + ++++ F++rf eal ++s+lfd+ Manes.02G130900.1.p 506 -IAQKWETIKYEDLNIDRDEMTVVNCLFRFRNLPDDTVVANSARDTVLKLIRRIKPDIFIHGVVNGTYTAPFFVTRFKEALFHFSSLFDM 594 .7************************************************************************************ PP GRAS 271 leaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvl 360 +e+++pre+e+r+ +E+e++gr+i+nv+aceg+er+er et+++W+ r ++aGF++++l++++ k++++ +r + + + v+e+ ++++ Manes.02G130900.1.p 595 FEVTIPREDEQRMLYEKEIFGRDIMNVIACEGTERVERPETYKQWQVRNMRAGFRQLSLDQEILKKVRCTVRSEYHKDFVVDEDGRWMLQ 684 **********************************************************************9888******** PP GRAS 361 gWkdrpLvsvSaWr 374 gWk+r + ++S+W+ Manes.02G130900.1.p 685 GWKGRVINALSVWK 698 ***********8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	66.747	301	678	IPR005202	Transcription factor GRAS
Pfam	PF03514	7.0E-116	329	698	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 703 aa Download sequence Send to blast
MNTLLQELPD SMNRFKLQNT FEYFPISLSS NKDLLSGYEL NNNSINPYSS FASFGPHIQP 60 TNDFTSSSSS SLSSEGHDPN NNVVLKYISD MLMEEDLEGK TCMLQDSLAL QAAEKSLYDV 120 LGQEYPHSLD HCSQKVESTD DTSPWSSSVD SSKTYPAADN TSVEKSNWVF NQVDLDFSGT 180 QSSLIDSPES ALIGPDFHSE IQSLTVFRQG IVDGDSLVLA TKSNSDKERD YSPNGSRGRK 240 NHQREDGDYL EEERSNKQSA ISLAESEQSE MFDEVLLCSS ESNESETCAP FEKSQNGASR 300 NYGQPKGSNS RSMRGRRQGN KGEVVDLPTL LTQCAQAVAI NDQRTATELL RQIGQHSSAY 360 GDGNQRLAHY FSKALETRLA GTRMPKYIPL VSNKAPVSDI LKAYQVYVKA CPFKKMSNFF 420 ANQTIFKLAE KSTRLHVIDF GILYGFQWPC LIQRLSQRPG GPPKLRITGI ELPQPGFRPA 480 ERVEETGHRL QRYCERFNVP FEYNVIAQKW ETIKYEDLNI DRDEMTVVNC LFRFRNLPDD 540 TVVANSARDT VLKLIRRIKP DIFIHGVVNG TYTAPFFVTR FKEALFHFSS LFDMFEVTIP 600 REDEQRMLYE KEIFGRDIMN VIACEGTERV ERPETYKQWQ VRNMRAGFRQ LSLDQEILKK 660 VRCTVRSEYH KDFVVDEDGR WMLQGWKGRV INALSVWKPV RQ*

Sequence ? help Back to Top

Protein Sequence Length: 703 aa Download sequence Send to blast

MNTLLQELPD SMNRFKLQNT FEYFPISLSS NKDLLSGYEL NNNSINPYSS FASFGPHIQP  60
TNDFTSSSSS SLSSEGHDPN NNVVLKYISD MLMEEDLEGK TCMLQDSLAL QAAEKSLYDV  120
LGQEYPHSLD HCSQKVESTD DTSPWSSSVD SSKTYPAADN TSVEKSNWVF NQVDLDFSGT  180
QSSLIDSPES ALIGPDFHSE IQSLTVFRQG IVDGDSLVLA TKSNSDKERD YSPNGSRGRK  240
NHQREDGDYL EEERSNKQSA ISLAESEQSE MFDEVLLCSS ESNESETCAP FEKSQNGASR  300
NYGQPKGSNS RSMRGRRQGN KGEVVDLPTL LTQCAQAVAI NDQRTATELL RQIGQHSSAY  360
GDGNQRLAHY FSKALETRLA GTRMPKYIPL VSNKAPVSDI LKAYQVYVKA CPFKKMSNFF  420
ANQTIFKLAE KSTRLHVIDF GILYGFQWPC LIQRLSQRPG GPPKLRITGI ELPQPGFRPA  480
ERVEETGHRL QRYCERFNVP FEYNVIAQKW ETIKYEDLNI DRDEMTVVNC LFRFRNLPDD  540
TVVANSARDT VLKLIRRIKP DIFIHGVVNG TYTAPFFVTR FKEALFHFSS LFDMFEVTIP  600
REDEQRMLYE KEIFGRDIMN VIACEGTERV ERPETYKQWQ VRNMRAGFRQ LSLDQEILKK  660
VRCTVRSEYH KDFVVDEDGR WMLQGWKGRV INALSVWKPV RQ*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_A	9e-52	333	699	24	379	Protein SCARECROW
5b3h_D	9e-52	333	699	24	379	Protein SCARECROW
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.02G130900.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021603986.1	0.0	scarecrow-like protein 30
TrEMBL	A0A2C9WG48	0.0	A0A2C9WG48_MANES; Uncharacterized protein
STRING	cassava4.1_002718m	0.0	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF131	34	339

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G29060.1	0.0	GRAS family protein

Link Out ? help Back to Top
Phytozome	Manes.02G130900.1.p