PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Manes.02G130800.1.p

Organism

Manihot esculenta

Taxonomic ID

3983

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

GRAS

Protein Properties

Length: 663aa MW: 75465.2 Da PI: 6.9834

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.02G130800.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	361.3	1.4e-110	289	658	3	374
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92 +lL +cA+av+++d+++a++lL ++++ +sp gd +qRla++f+++L+arla++++ y + +s+ts ++ l+a++++ ++P+ + Manes.02G130800.1.p 289 SLLPQCAQAVANNDQRAAKELLRQVRQYSSPFGDGNQRLAHFFVNGLEARLAGTGTPGYTPVVSSTTS---AADMLKAYHAYITACPFQT 375 6899***********************************************999999999888888...99************* PP GRAS 93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnv 180 +s+l a ++I++ +e+ +r+HiiDf+i +G+QWp+L++ L++R +gpp+l iTg++ p++g +++eetg+rL+k++e+++vpfe+n+ Manes.02G130800.1.p 376 MSYLYASHTIMKLAEKVSRLHIIDFGILYGFQWPSLIERLSTRIGGPPKLCITGIEFPQPGfrPLQRVEETGRRLRKYCERFNVPFEYNP 465 ********************************************************9999********************** PP GRAS 181 lvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfds 270 +a+++e++++e+L+++++E+++Vn+ ++l++l+d+++ ++s rd vLkl+++++P+++++ + +n++ F++rf eal ++salfd+ Manes.02G130800.1.p 466 -IAQKWETIQYEDLKIDRNEMIVVNCLYRLKNLPDDTMVTNSVRDIVLKLMRRINPDIFIHGVVNGTYNAPFFVTRFREALFHFSALFDM 554 .7************************************************************************************ PP GRAS 271 leaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvl 360 ++a++pre+ er++ E+e++gr ++nv+aceg er+er et+++W+ r +aGF+++pl++++ k++ + ++ +++ + v+e+ +++++ Manes.02G130800.1.p 555 IDATIPREEPERMMFEKEIFGRYAMNVIACEGGERVERPETYKQWQVRNIRAGFRQLPLDQENLKKVIATVKSNYNKNFVVDEDGQWMLQ 644 ***********************************************************************999******** PP GRAS 361 gWkdrpLvsvSaWr 374 gWk+r ++++S+W+ Manes.02G130800.1.p 645 GWKGRIVYALSVWK 658 ***********8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	64.277	261	638	IPR005202	Transcription factor GRAS
Pfam	PF03514	5.0E-108	289	658	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 663 aa Download sequence Send to blast
MTRYRFDHAT MSVLPNHHLV NDFQLYHESV HPQQPLFPTN AHASSSDAAS HSGSSPEADS 60 LDNSEFSNAI LKYISDMLME EELEGKNCML QDGLALQAAE KSFYDVLGQK YPPSSDQSSG 120 FDQNIHSLDS GFTWSANSDS SNTFTTSIHL AESSWIFYQA EFELSHVNTL QVPDLCRESI 180 SNASSLILPE SPNARDSHSV KDWRERKHHQ LEENAYLEGR SNKHSAFSNE KPEVTEIFDE 240 VLLGQAGKND RGSLALQNDG KLKNDGQKKG KKARSKKRGG KKEVVDLWSL LPQCAQAVAN 300 NDQRAAKELL RQVRQYSSPF GDGNQRLAHF FVNGLEARLA GTGTPGYTPV VSSTTSAADM 360 LKAYHAYITA CPFQTMSYLY ASHTIMKLAE KVSRLHIIDF GILYGFQWPS LIERLSTRIG 420 GPPKLCITGI EFPQPGFRPL QRVEETGRRL RKYCERFNVP FEYNPIAQKW ETIQYEDLKI 480 DRNEMIVVNC LYRLKNLPDD TMVTNSVRDI VLKLMRRINP DIFIHGVVNG TYNAPFFVTR 540 FREALFHFSA LFDMIDATIP REEPERMMFE KEIFGRYAMN VIACEGGERV ERPETYKQWQ 600 VRNIRAGFRQ LPLDQENLKK VIATVKSNYN KNFVVDEDGQ WMLQGWKGRI VYALSVWKPV 660 HD*

Sequence ? help Back to Top

Protein Sequence Length: 663 aa Download sequence Send to blast

MTRYRFDHAT MSVLPNHHLV NDFQLYHESV HPQQPLFPTN AHASSSDAAS HSGSSPEADS  60
LDNSEFSNAI LKYISDMLME EELEGKNCML QDGLALQAAE KSFYDVLGQK YPPSSDQSSG  120
FDQNIHSLDS GFTWSANSDS SNTFTTSIHL AESSWIFYQA EFELSHVNTL QVPDLCRESI  180
SNASSLILPE SPNARDSHSV KDWRERKHHQ LEENAYLEGR SNKHSAFSNE KPEVTEIFDE  240
VLLGQAGKND RGSLALQNDG KLKNDGQKKG KKARSKKRGG KKEVVDLWSL LPQCAQAVAN  300
NDQRAAKELL RQVRQYSSPF GDGNQRLAHF FVNGLEARLA GTGTPGYTPV VSSTTSAADM  360
LKAYHAYITA CPFQTMSYLY ASHTIMKLAE KVSRLHIIDF GILYGFQWPS LIERLSTRIG  420
GPPKLCITGI EFPQPGFRPL QRVEETGRRL RKYCERFNVP FEYNPIAQKW ETIQYEDLKI  480
DRNEMIVVNC LYRLKNLPDD TMVTNSVRDI VLKLMRRINP DIFIHGVVNG TYNAPFFVTR  540
FREALFHFSA LFDMIDATIP REEPERMMFE KEIFGRYAMN VIACEGGERV ERPETYKQWQ  600
VRNIRAGFRQ LPLDQENLKK VIATVKSNYN KNFVVDEDGQ WMLQGWKGRI VYALSVWKPV  660
HD*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	4e-46	287	658	5	375	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.02G130800.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021603987.1	0.0	scarecrow-like protein 9
Swissprot	O80933	0.0	SCL9_ARATH; Scarecrow-like protein 9
TrEMBL	A0A2C9WDF0	0.0	A0A2C9WDF0_MANES; Uncharacterized protein
STRING	cassava4.1_031654m	0.0	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF131	34	339

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G29060.1	0.0	GRAS family protein

Link Out ? help Back to Top
Phytozome	Manes.02G130800.1.p