PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Manes.02G104000.1.p

Organism

Manihot esculenta

Taxonomic ID

3983

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

WOX

Protein Properties

Length: 289aa MW: 32625.7 Da PI: 6.674

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.02G104000.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	62.7	5.4e-20	33	94	2	57
T--SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek..nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 ++R+t+t++q+++L++l+++ r psae++++++++l +++ ++V++WFqN++a+e++ Manes.02G104000.1.p 33 STRWTPTTDQIRILKDLYYNsgVRSPSAEQIQKISARLrqygKIEGKNVFYWFQNHKARERQ 94 58***************8789***********************************97 PP
2	Wus_type_Homeobox	114.3	6.2e-37	32	96	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 ++tRWtPt++Qi+iL++ly+ sG+r+P++e+iq+i+a+L++yGkie+kNVfyWFQN+kaRerqk+ Manes.02G104000.1.p 32 SSTRWTPTTDQIRILKDLYYnSGVRSPSAEQIQKISARLRQYGKIEGKNVFYWFQNHKARERQKK 96 789*************9779***************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.97E-11	26	99	IPR009057	Homeodomain-like
PROSITE profile	PS50071	10.527	29	95	IPR001356	Homeobox domain
SMART	SM00389	4.3E-5	31	99	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	5.7E-7	34	94	IPR009057	Homeodomain-like
CDD	cd00086	3.33E-6	34	96	No hit	No description
Pfam	PF00046	2.4E-17	34	94	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 289 aa Download sequence Send to blast
MEPQQQQQQQ NQQLQNEDSN SGVKGSFLCR QSSTRWTPTT DQIRILKDLY YNSGVRSPSA 60 EQIQKISARL RQYGKIEGKN VFYWFQNHKA RERQKKRFTT DVPMQQRTVS NASNWKPEDY 120 PFHNKYPNTT SGFSSSSPSS AGGSTVGQMG NYGYRSVTIE NSFRDCLIPA GANSGVVGSM 180 SPSYGWVGID TYSSAYSHFD KRKSSNEILE GEEREVQEEE AITQEIETLP LFPTQREDTN 240 GILCNLKHNP ICYPHNYWYG SDDGNNTSRT FLELSLNSYG NGQAPDSI*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that plays a central role during developmental processes such as early embryogenesis and flowering, probably by regulating expression of specific genes. Required to specify stem cell identity in meristems, such as shoot apical meristem (SAM). Acts in parallel with HAM. {ECO:0000269\|PubMed:12208843}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.02G104000.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021603471.1	0.0	protein WUSCHEL-like
Swissprot	Q8LL11	1e-74	WUS_PETHY; Protein WUSCHEL
TrEMBL	A0A2C9WCM0	0.0	A0A2C9WCM0_MANES; Uncharacterized protein
STRING	cassava4.1_023602m	0.0	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF8241	33	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G17950.1	2e-40	WOX family protein

Link Out ? help Back to Top
Phytozome	Manes.02G104000.1.p

Publications ? help Back to Top
Stuurman J,Jäggi F,Kuhlemeier C Shoot meristem maintenance is controlled by a GRAS-gene mediated signal from differentiating cells. Genes Dev., 2002. 16(17): p. 2213-8 [PMID:12208843]