PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.02G096400.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family C2H2
Protein Properties Length: 388aa    MW: 44194.4 Da    PI: 8.9697
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.02G096400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.30.00025133156123
                          EEETTTTEEESSHHHHHHHHHH.T CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                          y C  Cg+ F +++ L++H +  H
  Manes.02G096400.1.p 133 YLCRVCGRKFYNNEKLTNHFKQiH 156
                          56*****************98766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.10103.7E-851136IPR029060PIN domain-like
SuperFamilySSF576676.15E-5132158No hitNo description
PROSITE profilePS5015712.03133161IPR007087Zinc finger, C2H2
PROSITE patternPS000280135156IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.0E-4137157IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
CDDcd061671.87E-17150285No hitNo description
PfamPF019362.5E-7204288IPR021139NYN domain, limkain-b1-type
Gene3DG3DSA:3.40.50.10103.7E-8218285IPR029060PIN domain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005739Cellular Componentmitochondrion
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 388 aa     Download sequence    Send to blast
MFLKFGAIFQ SIQSSQLKTL NPYPRLFRYC HFDSKLVFNS INQTSNPAPI KPQTNVAIFW  60
DLDNKPPNSF PPFEAAFRLK MAASSFGVVR YMVAYANRHA FSYVPQAVKE KRKERALLNQ  120
LENKGVIKPI EPYLCRVCGR KFYNNEKLTN HFKQIHEREH QKRLNQIESA RGKRRVKLVA  180
RYAMKLQKYK NAVRGVLNPK VGYGLADELK RAGFWVRRVS DRPQAADVAL RDHMVDLMDK  240
RRAECLVLVS DDSDFVGVLK EAKLRCLKTV VVGDVNDGAL KRAADAGFSW QEILMGKAKK  300
EAVSVVGRWK DQDILKKLEW TYNPEEEKTL CGRVAGFDNY ESDSNSDDDE NEGGDFEGIS  360
DDDEADCVEK DTACAWWELN SDPGASF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.02G096400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021604466.10.0uncharacterized protein LOC110609298
TrEMBLA0A2C9WCT80.0A0A2C9WCT8_MANES; Uncharacterized protein
STRINGcassava4.1_012484m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF75002533
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G12240.11e-148C2H2 family protein