PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.02G041300.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family MYB
Protein Properties Length: 198aa    MW: 22368.3 Da    PI: 5.1842
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.02G041300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding60.24.3e-191865148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g+WT+eEd++l+++++ +G ++Wk++a + g++R++k+c++rw++yl
  Manes.02G041300.1.p 18 KGAWTAEEDKILAEYIEVHGAKRWKAVAMKAGLKRCGKSCRLRWLNYL 65
                         79********************************************97 PP
2Myb_DNA-binding52.98.2e-1771116148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          rg+ + eE++l+++++k+lG++ W++Ia +++ gRt++++k++w+++l
  Manes.02G041300.1.p  71 RGNISDEEEDLILRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNSHL 116
                          7899******************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.8821365IPR017930Myb domain
SuperFamilySSF466892.57E-2917112IPR009057Homeodomain-like
SMARTSM007171.2E-151767IPR001005SANT/Myb domain
PfamPF002491.0E-171865IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.7E-251972IPR009057Homeodomain-like
CDDcd001671.15E-112065No hitNo description
PROSITE profilePS5129426.50866120IPR017930Myb domain
SMARTSM007174.3E-1670118IPR001005SANT/Myb domain
PfamPF002494.2E-1571116IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.8E-2573120IPR009057Homeodomain-like
CDDcd001673.10E-1175116No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009957Biological Processepidermal cell fate specification
GO:0010090Biological Processtrichome morphogenesis
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048481Biological Processplant ovule development
GO:0048629Biological Processtrichome patterning
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
MAPVNSEESS NSKMVMNKGA WTAEEDKILA EYIEVHGAKR WKAVAMKAGL KRCGKSCRLR  60
WLNYLRPNIK RGNISDEEED LILRLHKLLG NRWSLIAGRL PGRTDNEIKN YWNSHLSKKI  120
NKMERTPESS IPQESIPDNA AAAAQDMMEE GSQGAVFPEL SFDADGFFDF SMEGSCSLEW  180
VNKFLELDED PWLADKS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C7e-301612025128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH2/EGL3/MYC146 or BHLH12/MYC1. Regulates the epidermal cell fate specification. Mediates the formation of columellae and accumulation of mucilages on seed coats. Controls the elongation of epidermal cells positively in roots but negatively in stems, leading to the promotion of primary roots elongation and repression of leaves and stems elongation, respectively. Ovoids ectopic root-hair formation, probably by inducing GL2 in roots. Controls trichome initiation and branching. {ECO:0000269|PubMed:11437443, ECO:0000269|PubMed:15361138, ECO:0000269|PubMed:15668208, ECO:0000269|PubMed:15728674}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.02G041300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM0346773e-42KM034677.1 Jatropha curcas clone JcMYB057 MYB family protein gene, complete cds.
GenBankKM0346783e-42KM034678.1 Jatropha curcas clone JcMYB058 MYB family protein gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021603723.11e-144transcription factor MYB114-like
RefseqXP_021603724.11e-144transcription factor MYB114-like
SwissprotQ962763e-55MYB23_ARATH; Transcription factor MYB23
TrEMBLA0A2C9WB311e-143A0A2C9WB31_MANES; Uncharacterized protein
STRINGcassava4.1_028721m1e-144(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21483288
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G40330.11e-57myb domain protein 23
Publications ? help Back to Top
  1. Khosla A, et al.
    HD-Zip Proteins GL2 and HDG11 Have Redundant Functions in Arabidopsis Trichomes, and GL2 Activates a Positive Feedback Loop via MYB23.
    Plant Cell, 2014. 26(5): p. 2184-2200
    [PMID:24824485]
  2. Yu D, et al.
    RPN1a, a subunit of the 26S proteasome, controls trichome development in Arabidopsis.
    Plant Physiol. Biochem., 2015. 88: p. 82-8
    [PMID:25676129]
  3. Lung SC, et al.
    Arabidopsis ACYL-COA-BINDING PROTEIN1 interacts with STEROL C4-METHYL OXIDASE1-2 to modulate gene expression of homeodomain-leucine zipper IV transcription factors.
    New Phytol., 2018. 218(1): p. 183-200
    [PMID:29288621]
  4. Kohanová J, et al.
    Root hair abundance impacts cadmium accumulation in Arabidopsis thaliana shoots.
    Ann. Bot., 2018. 122(5): p. 903-914
    [PMID:29394308]